UFO03350.5prime Sequence
1109 bp (1012 high quality bases) assembled on 2009-02-03
> UFO03350.5prime
CAGTCGACATGCTGCTGGTGCGTCAGCTATTCGGGGCTTCGGCCAACTCC
TGGGCACGCGCCCTCATCATATTCGTACTGGCCTGGATCGGGTTGGTCTA
CGTGTTCGTGGTCAAGCTGACCAATACTCAGGGCCAGCAGGCGGCCGGGG
AGAGTGAGCTGAACGCCCGTCGCATATCACAGGCGCTCCAGATGCTGGAG
CACACGAGACAGCGCAATGAGGAGCTTAAACAGCTCATCGACGAGTTGAT
GAGTGACCAACTGGACAAGCAGAGCGCAATGAAACTGGTGCAAAGGCTGG
AGAACGATGCGCTAAATCCAAAGCTGGCGCCCGAGGTCGCCGGCCCGGAA
CCAGAATCCATGTTCGAGTCCGCCCCCGCTGATCTGCGCGGTTGGAATAA
TGTGGCCGAGGGAGCGCCCAATGATCTGGAGGCCGGTGTTCCGGATCATG
GCGAATTCGAGCCCAGCCTAGAGTACGAGTTCACGCGCAGACGCATCCAG
ACGAACATCGGTGAGATCTGGAATTTCTTCAGCAGTGAACTGGGCAAAGT
GCGTAAGGCAGTGGCCGCCGGCCATGCGAGTGCCGATTTGGAGGAGTCCA
TTAACCAGGTGCTGCTCCAAGGCGCCGAGCACAAGCGCTCTCTGCTGAGC
GATATGGAGCGGATGCGTCAGTCCGATGGCTACGAGGCCTGGCGACACAA
GGAGGCACGGGATTTGAGCGATTTGGTACAGCGGCGCCTGCACCATCTAC
AGAATCCCAGTGATTGCCAGAATGCTCGCAAGCTGGTCTGTAAGCTCAAC
AAGGGCTGTGGCTACGGCTGCCAACTGCACCATGTGGTGTATTGCTTTAT
AGTGGCCTACGCCACCGAGCGGACGCTCATCTTAAATCCCGCGGATGGCG
GTATCACAGGCGCTGGGAGAGTGTTCCACCGGTGTCCACAGCTGCATGAT
GCGGCACCGCACACATACAATTGCCGGCAGCGACACCCAGTGCTGTGTTG
CCCATCATGACTCGCTGATGCGAGACGCGTACTGCCGTCGGCGTCGAGAT
CTGCGCCGAACTAAGGTCTGCATGAACCCATCGTTGGGGTGTCAGTCTAG
ATTGTCCGA
UFO03350.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:46:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| FucT6-RA | 2795 | CG2448-RA | 504..1603 | 8..1074 | 4685 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:46:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11708244..11708796 | 804..252 | 2750 | 99.8 | Minus |
| X | 23542271 | X | 11709203..11709448 | 253..8 | 1230 | 100 | Minus |
| X | 23542271 | X | 11708030..11708137 | 908..802 | 490 | 99.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:46:20 has no hits.
UFO03350.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:03:03 Download gff for
UFO03350.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| FucT6-RA | 497..1560 | 1..1040 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:39:17 Download gff for
UFO03350.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| FucT6-RA | 498..1561 | 1..1040 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:40:21 Download gff for
UFO03350.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| FucT6-RA | 498..1561 | 1..1040 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:40:21 Download gff for
UFO03350.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11708245..11708794 | 254..803 | 99 | <- | Minus |
| X | 11709203..11709454 | 1..253 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:39:17 Download gff for
UFO03350.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11602278..11602827 | 254..803 | 99 | <- | Minus |
| arm_X | 11603236..11603487 | 1..253 | 98 | | Minus |
