UFO03351.5prime Sequence
1133 bp (1045 high quality bases) assembled on 2009-02-03
> UFO03351.5prime
CAGTCGACATGATGTCAAAGGAAAGCCTGGAAACTTGCGAACTTACTCTG
CCCGTGGGCCAAATTAAGGGCGTCAAACGCCTTAGTCTTTACGACGATCC
CTACTTCAGCTTCGAGAAGATCCCCTTTGCGAAGCCCCCGTTGGGAGAAC
TGAGATTTAGGGCCCCCGTGCCAGCAGATCCGTGGAGCGGCGTTCTGGAC
TGCACCCACTATGCAGAGAAGCCAACCCAGAGGGGCTTACTGACCCGTGA
AATCGAAGGCGGCGAGGATTGTCTGTATCTGAACGTCTATTCCAAGCAGC
TGAAAAGTGAGAAGCCATTGCCGGTGATGGTGTACATTTATGGCGGGGCC
TTCACCGTAGGAGAGGCCACCCGCGAATTGTACGGCCCGGACTATTTTAT
GACCAAAGATGTTGTTCTTGTGACGCTTAACTATCGCGTGGATTGTTTGG
GATTCCTATCGCTCAAGGACCCGAGTCTGAAAGTTCCCGGAAACGCAGGA
CTCAAGGACCAAGTGCTAGCTCTCAAGTGGGTCAAGCAGTACATCTCCAA
CTTCAATGGCGATGATAGTAATATTACGGTATTCGGAGAGAGCGCCGGAG
GTTGCTCCACCCACTTCATGATGTGTACGGAACAGACCAGGGGACTGTTT
CACAAGGCCATTCCCATGTCAGGAACAGTGCACAACTACTGGGCCAATAA
TCCGGCCGAAGACTTTGCCTTTCGCCTGGCTCAGCAGAATGGTTTCACTG
GCGAAAATGACGACGCCAAGGTACTGGAATATCTCCAAGGAGTTCCGGCT
AGAGATTTGGTGAACCATAATTTGCTAACACCCGAGCACCGGAGGACGGT
CTGCTCTTCGCCTTTGGACCCACTGTGGAGGCATATGTGGGTGAGGATTG
CGTGGTGCCCAAACCGCCAGTAGAGATGGCCCGAGATGCGTGTCCAACAT
TTTCAGTCATGTGGGTGGAACCTCCTTCGAGGTCTTTCATGTATCAGCGT
GTCGGCCATCTCAAGGCATTGGATAGCTAGCCAGATCCACCAGCTGTGCC
CGTGGATGTGCGTACGTCAGTACGAAAAAGAAATTGGGTCACGCCAGGGC
CTGATGAGCCTCACTTCCGGAATTTCGCACCAG
UFO03351.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:11:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alpha-Est5-RA | 1754 | CG1089-RA | 91..1181 | 9..1081 | 4960 | 98.1 | Plus |
| alpha-Est5-RB | 2490 | CG1089-RB | 91..1184 | 9..1081 | 4920 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:11:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7534949..7535536 | 1027..450 | 2470 | 97.4 | Minus |
| 3R | 32079331 | 3R | 7535946..7536221 | 299..24 | 1380 | 100 | Minus |
| 3R | 32079331 | 3R | 7535732..7535885 | 451..298 | 770 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 23:11:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 1063..1101 | 287..325 | 114 | 76.9 | Plus |
UFO03351.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:03:02 Download gff for
UFO03351.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha-Est5-RA | 226..1324 | 9..1087 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:12:53 Download gff for
UFO03351.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha-Est5-RA | 91..1189 | 9..1087 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:02:29 Download gff for
UFO03351.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha-Est5-RA | 91..1189 | 9..1087 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:02:29 Download gff for
UFO03351.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7534879..7535535 | 451..1087 | 96 | <- | Minus |
| 3R | 7535733..7535883 | 300..450 | 100 | <- | Minus |
| 3R | 7535946..7536219 | 26..299 | 100 | <- | Minus |
| 3R | 7536284..7536300 | 9..25 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:12:53 Download gff for
UFO03351.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3360601..3361257 | 451..1087 | 96 | <- | Minus |
| arm_3R | 3361455..3361605 | 300..450 | 100 | <- | Minus |
| arm_3R | 3361668..3361941 | 26..299 | 100 | <- | Minus |
| arm_3R | 3362006..3362022 | 9..25 | 100 | | Minus |
