UFO03354.5prime Sequence
772 bp (46 high quality bases) assembled on 2009-02-03
> UFO03354.5prime
CAATCCACATGAGTGCTTCCGGGAAGAGTCTTCTGGGCCTGTGGCTCTAC
AGGAGTGGCGAACAGGAGTGGGCCGTCAAGCAGGGAAGTCCCTTGCACCA
GCTTAAAAAGGATTCCACCACATCCGGGTCCCGCTCGCATCCAAGTCTCG
GCAGAGACGCCTCCGCTCCGCCGGAACCTCCAAGGCTGGCCTTCGGTGGT
GGTGGTCAGGATAATGGAAGACAGCATTCCCCTGACGAACGCATCTCCAT
CATTTTCACCCTGCGTAACCAGGTGGGAAACCTGGCCAGAGCCCTCCAGG
TTTTCCAGGAGCTGGGCATCATTGTGCTGCATTTGGAGCTATCGCCGCTT
GATATGGCCACCAACCAGGCGGATGTCCTCGTGGATGTGGAGTGCGATCA
GCGTCGACTCGACCAGGTGGTCAAGATGCTCAACCGAGAGGTGGCCTCTG
TGAACTACACTTCCGTGAACACGCGGGGATTGGCCAGGGCTCCGTCGCTA
TCGGCGTGCTCCAATTTTGACTTCTGCGATATGGTGTGGTTTCCGCGAAA
GATTTCCGATTTGGACAAGGCGCAGAATGTGCTCATGTACGGCTCGCACT
TGGATGCCCACCATCAAGTATTCAATGACCCCATGTACGCTAAACGGCGA
GAGCAATTTCCTGCCAGTGTCAACATCTTCAACCATGACAACCCCATTCC
ACGGGTGCAATACACACCTGAGGAGATGAAAACCTGGGGCACCGTTTTCT
TGAAGCTCCATCGTCTCTACGT
UFO03354.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Trh-RA | 2183 | CG9122-RA | 84..847 | 9..772 | 3295 | 95.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1192580..1193090 | 519..9 | 2390 | 97.8 | Minus |
| 3L | 28110227 | 3L | 1192311..1192480 | 682..513 | 580 | 89.4 | Minus |
| 3L | 28110227 | 3L | 1192183..1192231 | 737..689 | 215 | 95.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:56:20 has no hits.
UFO03354.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:08:00 Download gff for
UFO03354.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trh-RA | 80..843 | 9..772 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:22:27 Download gff for
UFO03354.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trh-RA | 84..847 | 9..772 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:46:17 Download gff for
UFO03354.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trh-RA | 84..847 | 9..772 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:46:17 Download gff for
UFO03354.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1192071..1192106 | 737..772 | 91 | <- | Minus |
| 3L | 1192184..1192234 | 686..736 | 94 | <- | Minus |
| 3L | 1192308..1192473 | 520..685 | 89 | <- | Minus |
| 3L | 1192580..1193090 | 9..519 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:22:27 Download gff for
UFO03354.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1192071..1192106 | 737..772 | 91 | <- | Minus |
| arm_3L | 1192184..1192234 | 686..736 | 94 | <- | Minus |
| arm_3L | 1192308..1192473 | 520..685 | 89 | <- | Minus |
| arm_3L | 1192580..1193090 | 9..519 | 97 | | Minus |
