UFO03356.5prime Sequence
997 bp (88 high quality bases) assembled on 2009-02-03
> UFO03356.5prime
CAATCCACATGGACCTGGCTCAGTATCCGGTACTGCCGCGGGGAAGTCCG
GACGATCCGCTGGCCGATCCCTTCGACGATCCATCCTACAGCTTTAGTTT
TCGCACTCCGGATCAGTCGCGCAGCGAGGAGAATGATTCCGGGAATAGGA
TAAGAGGTCTGTACTCCTATTTGGACGACGTGGGCGAGCGGTTTTTTGTT
CGTTATGCAGCTGGACCCGGAACCGGATTCAAGATCTCCAACGCTGTGCC
GGACAGCCCATCTGTTGTGGCGAACTCCATTCCTCTGTACACGTCCCATC
CCAAAGCACGCGGCAAGATGTCTGTGCAAAGGGGGCCGGCTGGAAGCTAT
AAGCTGATCGCCTCAGGTTCGGATCACCGACGGGCATAAAGTCGAGCACC
CGATGGCCTGGTGCGAGGAACCTACTCCTTCCTGGACGACAAGGGCGTGC
AGCGGACAGTGGAGTATATAGCTGGAGCAAGAATTGGCTACCGGGTGGTG
CGAAATCCGATTGGTCCTGGAACCCATAACAATCCCTCTGTGGCTGATTT
TCGTTTGACAGATCCAGATTTCCGACTGGCTAATGATTTTGGCACGCGTG
CTGGTGGTGGCTTAAGTCCGAAAGGAGGTGGTGGTGGATCGTGTGGGGGA
AGTGACTCTTGCTTGCTTTGCTATTTACACCACGAAGGAAAAGCTGCACT
GCTATACAAGAAAATTATGGAAAAATATTTGATGTATAGTGCCTTGACTA
TGATCATAATCAGCCATACCACATTTGTAAGGTTTTACTTGCTTTAAAAA
CCTCCCACACCTCCCCCTGACCTGACACATAAATGAATGCATTGTTGTTG
TTAACTTGTTGTTGCACTTATATGGTTACAAATAAAGCATAACATCACAA
TTTCACAATCAGCATTTTTTCACTGCATTCTAGTGTGGTTGTCCAACTCA
TCATGTATCTTATCATGTCTGGATCCCGCGCGGTCGCTGGCCACGGT
UFO03356.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:12:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr73D-RC | 2676 | CG9665-RC | 1045..1690 | 9..654 | 2945 | 97.1 | Plus |
| Cpr73D-RB | 2158 | CG9665-RB | 527..1172 | 9..654 | 2945 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:12:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16940086..16940585 | 654..155 | 2215 | 96.2 | Minus |
| 3L | 28110227 | 3L | 16940635..16940783 | 157..9 | 745 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:12:11 has no hits.
UFO03356.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:07:58 Download gff for
UFO03356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr73D-RB | 298..950 | 2..658 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:58:56 Download gff for
UFO03356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr73D-RB | 524..1176 | 2..658 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:45:08 Download gff for
UFO03356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr73D-RB | 524..1176 | 2..658 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:45:08 Download gff for
UFO03356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16940082..16940583 | 157..658 | 95 | <- | Minus |
| 3L | 16940636..16940786 | 2..156 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:58:56 Download gff for
UFO03356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16933736..16933886 | 2..156 | 97 | | Minus |
| arm_3L | 16933182..16933683 | 157..658 | 95 | <- | Minus |
