UFO03357.5prime Sequence
1110 bp (1002 high quality bases) assembled on 2009-02-03
> UFO03357.5prime
CAGTCGACATGGAGGTGCAAGTGGGATGGCCAAAGCTGATCAAGATGGGA
GCCCAGTTGGTTGGCCACAAGGTGCAACAGTACCGGCTCTCCACGGGTCA
CACAGTGATTTTGGACACCAAGTACGGACAGGTGCGCGGACTCCAAAGGA
AGACGGTCTACGACAAGGAGCCGTACTTTGCCTTCGAGGGCATTCCGTAC
GCCAAGCCCCCCGTGGGTGACCTCCGATTCAGGGCTCCTCAGCCACCGGA
ACCCTGGCAAGGAGTGCTCAACTGCACTACCAATCGATCCAAGCCCATGC
AGAGGAACATGCTCCTGGGAATTGTCGAGGGCAGTGAGGATTGTTTGCAT
TTGAACGTTTATGTCAAAGCCTTGAAGTCGGAAAAACCGCTGCCCGTAAT
TGTGTGGATTTACGGAGGTGGTTTCCAAAAGGGTGAGGCCTCCAGGGATA
TTTACAGTCCGGATTACTTCATGAAGAAGCCAGTGGTATTCGTCGCTATC
AACTACAGGTTGGCAGCACTAGGATTTCTCAGTCTAAAGGACCCGAAGCT
GGATGTTCCTGGCAATGCGGGACTTAAGGACCAAGTAATGGCTCTGCGTT
GGATAAGTCAGAACATCGCCCACTTCAATGGCGACCCCAACAACATCACA
TTGATGGGAGAAAGTGCAGGATCGGCTTCTGTCCACGTCATGATGACCAC
AGAGCAAACACGTGGTCTCTTCCATAAAGCTATCATGCAATCGGGATGTG
CCCTCAGCGAATGGGTGGAGAGTCCGGATAACAATTGGGCATTCCGGCTG
GCCCAGAATCTGGGCTACAAGGGCGACGAGAAGGATGCGGATGTACTAAG
CTTTCTTAGTAAGGTTGCGCACGCCAGATAGCGGCTATTGATCAGGACGT
TATCATTTGGACGAGTGCGAAGCTTCCTACTATTCGCATTTGGTCTGTGA
TAGACCCTACGAAACGACCACTGTTGTGGTGCCCAAAAGGCACAAGATCT
GTTGTTCGAAGGGTGGGGCACGACTCCGTTATTGTCGTTGAAATTCTTCG
AGGCTTGTTTCCTACCACTAGTAGGACGATCTTGGCTGAACTTCCACACT
CCTGCAAGGA
UFO03357.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:22:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alpha-Est2-RB | 2141 | CG2505-RB | 288..1368 | 8..1073 | 4935 | 98.1 | Plus |
| alpha-Est2-RA | 1958 | CG2505-RA | 105..1185 | 8..1073 | 4935 | 98.1 | Plus |
| alpha-Est1-RA | 2123 | CG1031-RA | 294..925 | 116..747 | 535 | 73.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:22:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7543037..7543504 | 56..523 | 2340 | 100 | Plus |
| 3R | 32079331 | 3R | 7543890..7544395 | 521..1020 | 2090 | 97.8 | Plus |
| 3R | 32079331 | 3R | 7546931..7547128 | 747..550 | 390 | 79.8 | Minus |
| 3R | 32079331 | 3R | 7542849..7542898 | 8..57 | 250 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 19:22:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| I-element | 5371 | I-element DMIFACA 5371bp Derived from M14954 (g157749) (Rel. 44, Last updated, Version 2). | 586..635 | 603..652 | 115 | 70 | Plus |
UFO03357.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:16:34 Download gff for
UFO03357.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha-Est2-RA | 106..1189 | 8..1076 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:22 Download gff for
UFO03357.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha-Est2-RA | 105..1188 | 8..1076 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:11 Download gff for
UFO03357.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha-Est2-RA | 105..1188 | 8..1076 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:11 Download gff for
UFO03357.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7542849..7542896 | 8..55 | 100 | -> | Plus |
| 3R | 7543037..7543503 | 56..522 | 100 | -> | Plus |
| 3R | 7543892..7544375 | 523..997 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:22 Download gff for
UFO03357.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3368571..3368618 | 8..55 | 100 | -> | Plus |
| arm_3R | 3368759..3369225 | 56..522 | 100 | -> | Plus |
| arm_3R | 3369614..3370097 | 523..997 | 97 | -> | Plus |
