UFO03360.5prime Sequence
1095 bp (1006 high quality bases) assembled on 2009-02-03
> UFO03360.5prime
CAGTCGACATGGATACGACGCAAAGGAACCACCAAAATCTAGCCTTCGTG
GGCGACGACGGACGCAGTACGGCCAGCACAGTGGAGATTTCGACCAACAG
TCCAGCCCTGCGAGATAATTCCGATGACCAGGAGGCAGCCAAAGTGCCAG
AGGAGCGTGCCACCTGGGGCAAGGGCGTGGAGTTTCTGATGTCCTGCATC
GCCATGTCCGTGGGTCTGGGAAACGTGTGGCGATTCCCCTTTACTGCCCT
CGATAATGGCGGTGGCGCCTTCCTCATACCATATCTCATTGTCCTGTTCC
TGATTGGCAAACCGATTTACTATCTGGAAATGGTAATTGGCCAGTTTTCC
AGTCGGGGCTCGGTTAAAGTGTTCGATTTGTGCCCGGCGATGAAAGGTGT
TGGAGCTGGCCAGGCTTTCCAGGTGTTCATGCTCAGCACTTACTATGCCG
CCCTGGTAGCGATAATTGGCCGATATTTCATTGAATCATTTCGCAACCCA
TTGCCCTGGTCCACATGCCGTGCGGAATGGGGTATCCACTGCATTAACTC
AGCCCCCGATGCGAGTAATTGGTCTCAACTGGAAAGCAATGATCAGCGCC
CGCAAAATTACACAATGAAATCACAAAACGATCGGGTCATCACCAGTTCG
GAATGGTACTTTGTTAAGGAAGTGCTGCACGAGAAACCAAATATCGAGGA
AGGAATCGGCCTACCAAACTGGGAGTTGGTCATTGGACTTTTTATCGCCT
GGTCCTGTGTGTTTTTCATTATTCGTCGCGGAGTGAAGAGTTCGGGAAAG
GCATCCTACTTCCTGGCCCTTTTCCCGTACGTCATCATGGGTGTTCTTCT
GGTGCGAGCTGTAACTCTGCCGGGATCATAGACGGTATATACTACTTTAT
AAGCCGCAATGGGGAAAGATTTTGGACCCGAAGTTTGGTACGCGCTGTAA
CTCAGTGTTTCTACTCCTTGTCGTTGTTCGCAACATCATCATGTACTCCT
CGTCACAGTCAGCACATGTACACAGGATGCAGCAGTTGTAACGGGCTGAA
CACTATTAACTCCTCTGCTAGCTTGGATTCACAATCATTCCGGAA
UFO03360.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15279-RA | 2110 | CG15279-RA | 67..1154 | 9..1082 | 4925 | 97.9 | Plus |
| CG15279-RB | 2531 | CG15279-RB | 488..1575 | 9..1082 | 4925 | 97.9 | Plus |
| CG15279-RD | 2513 | CG15279-RD | 488..893 | 9..414 | 1970 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 14848672..14848978 | 398..92 | 1535 | 100 | Minus |
| 2L | 23513712 | 2L | 14846148..14846494 | 1003..665 | 1375 | 97.1 | Minus |
| 2L | 23513712 | 2L | 14846790..14847060 | 664..394 | 1355 | 100 | Minus |
| 2L | 23513712 | 2L | 14849039..14849122 | 92..9 | 420 | 100 | Minus |
| 2R | 25286936 | 2R | 12300722..12300885 | 328..165 | 325 | 79.9 | Minus |
| 3L | 28110227 | 3L | 9212982..9213163 | 178..359 | 310 | 78 | Plus |
| 2R | 25286936 | 2R | 9795678..9795857 | 180..359 | 240 | 75.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:12:12 has no hits.
UFO03360.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:03:05 Download gff for
UFO03360.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15279-RA | 31..1135 | 1..1093 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:06:28 Download gff for
UFO03360.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15279-RB | 480..1584 | 1..1093 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:41:26 Download gff for
UFO03360.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15279-RB | 480..1584 | 1..1093 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:41:26 Download gff for
UFO03360.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 14849039..14849130 | 1..92 | 95 | | Minus |
| 2L | 14846790..14847057 | 397..664 | 100 | <- | Minus |
| 2L | 14848674..14848977 | 93..396 | 100 | <- | Minus |
| 2L | 14846054..14846494 | 665..1093 | 94 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:06:28 Download gff for
UFO03360.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 14849039..14849130 | 1..92 | 95 | | Minus |
| arm_2L | 14846054..14846494 | 665..1093 | 94 | <- | Minus |
| arm_2L | 14846790..14847057 | 397..664 | 100 | <- | Minus |
| arm_2L | 14848674..14848977 | 93..396 | 100 | <- | Minus |
