UFO03365.5prime Sequence
1157 bp (1044 high quality bases) assembled on 2009-02-03
> UFO03365.5prime
CAGTCGACATGTTGCGCAACACGCCTTTCGGTGCCACGCCCACCTACAAA
CTACTTCTGGGCTTCGGACTATGCTCCCTTGGGGGCGCCATGCTATATGC
CTATTTCAAGACTCGAAACGACGAGGAGGAAGCGGACTCAGGTGGCCAAC
GGCCGGCATCCGGGATTAGAGGACAGACAGAGGAACAGAAGCCCCAGAAG
GAAGTGTGCCTCAAAATCGTCGTGGACAACGAGCATGTGCCCCTGATAAT
GGGTCGCGGTGGATCCAATATCAAGTTGATTGAAGAAAAGACCCTGGCCA
AGATAAGATTACGAGACAAAGACAGTGGCCACAAATTCTGCGACATTAGC
GGCGTTCCCGATGCGGTTAAGGCGGCTCGAGCTCTGCTTATCAAGGAAAT
TGAACGTGCGCCCGTGGTGAAAGTGGAACTGCAGGTGCCCCAGAGGCTGG
CCAGCAAAATTAACGGACGCGGCGGCGAGCTCCTCCAGGAGATCCGGAGC
AGTTCGCTAGCCAAGCTGAATATCGATTTAAATGGGCGGAATGGAAAGGC
CAAGATTACGATTATCGGCAATCAAAAGCAAGTGAACATAGCCCGAAAAA
TGCTGGATGATCAGATAGAGGAGGATGAGGAACTCGTGCGGTCCATGGAG
GAGGTGGAACAGCGTCGGGAGCCCCGCAGATCTCCCACCAACAGCATTGC
GTCCAGCATGTACTCCTCCCAGACATCCCTAAGCTCTCACACTCAGCCCA
GAGACAAGCTAATGGCCTCCAAGGGCGAGGGTAAGCCAATGGAGGTTATG
TCTCCGCGGTGGCCTCGCCCACTAAATTCTGGGTTCAGCTTATCGGACCG
CAGTCCAAGAAGCTCGATAGCATGGTCCAGGAGATGACCAGCTATTATAG
TAGTGCTGAAAACAGGCCAAGCACGTGCTGACTGCTCATATGTGGGTCAG
ATTGTGGCAGCCGTGTTTAGGTTCGACGAGAGTGGTATCGCCGCAGAATC
GTGGACTTATGCCTAACCAGTACAATCCAAAGGGAGCAGGTGATCGATCT
CTACTTCGTGGAACTATGGGAAATAGCGAATATATTTCGCCAGGCTGAAT
ATTCTGCGAAGCCTGGCGCACTTATTTTCCTCCACGCCTCAGGGTTCCAG
GCCGGTG
UFO03365.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:06:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| papi-RD | 2112 | CG7082-RD | 128..1267 | 7..1154 | 5210 | 97.9 | Plus |
| papi-RB | 2235 | CG7082-RB | 199..1338 | 7..1154 | 5210 | 97.9 | Plus |
| papi-RC | 2331 | CG7082-RC | 295..1434 | 7..1154 | 5210 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:06:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2223704..2224486 | 313..1093 | 3425 | 98.1 | Plus |
| 2L | 23513712 | 2L | 2223327..2223633 | 7..313 | 1535 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:06:09 has no hits.
UFO03365.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:16:19 Download gff for
UFO03365.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7082-RB | 193..1304 | 1..1115 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:30 Download gff for
UFO03365.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| papi-RC | 289..1400 | 1..1115 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:47:44 Download gff for
UFO03365.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| papi-RC | 289..1400 | 1..1115 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:47:44 Download gff for
UFO03365.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2223321..2223633 | 1..313 | 99 | -> | Plus |
| 2L | 2223705..2224507 | 314..1120 | 97 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:30 Download gff for
UFO03365.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2223321..2223633 | 1..313 | 99 | -> | Plus |
| arm_2L | 2223705..2224507 | 314..1120 | 97 | <- | Plus |
