UFO03367.5prime Sequence
1115 bp (993 high quality bases) assembled on 2009-02-03
> UFO03367.5prime
CAGTCGACATGGAAGCGGTGGCAAAGAAGGGCATGGAGAACTACAGATTT
GGCAGTGTGGACTATGCCGTTTTCCTGGGCATGATCGTATTATCCACCAG
CACGGGCATCTATTTCGGGTGCATCAAGAAGAGCAAGGTGAAGCTCGAGG
AGGCGGAACCCACTCTGCCGACGACCACGCCAAAAAGGCGGAAACACGAT
TTCGGATCGGAGAAGATGAGCGAGTATCTGCTAGGGTCACGCAATCTGAA
AGTTTTCCCCGTTGCCATGAGCCTGATAGCCAGCTATATATCGGGCGTTA
CCATACTGGGCACAACCTCTGAGATCTACAATTATGGCACGCAATATTGG
TTTATAGCCATAGCAATAATGCTCCAAGGTATTGCCGTCTCCTACGTCTA
CATACCAGTGTTCTCGGCTCTTCAAGTAGGCTCTTCCTATGAGTACTTGG
AGATGCGCTTTCATTCGGTCGTACGAAGTATTGCATCCTTTATGTTTATT
CTGGATGAGATTCTGTTTCTGCCTTTCATTGTGTATGTACCAGCTATAGC
TCTGAATCAGGTATCGGGCATTAATCTCCATGTGATTGCAGTGGTAATTG
TGGTCGTGTGTGTTTTCTACACCTTTGTCGGAGGAATCAAAGCAGTGGTC
CACACAGATGCTTGGCAGGTGCTGGTCATGTTCCTTTCCGTTCTTGCTGT
GGCTATTTTGGCCACTGTCTATGCAAATGGCTTGAATGTCCTTTTCGATG
ATGCTGCCAAAGGTGGCCGATTGATCTTTAACAATACAAACCCATCGCCT
TATGTAAAGGCACACTGTTTGGAGCGTCCTAATCGGGGGATTCTCCTACT
GGACCTCATTCATGCCGTCAACCAGACCATGGTCCAGCGATACATGTCTC
TTCCATCGCTCAGAAGGCTCGTGCTTCCATGGCCATTTTTACATGGCGTG
CTGCCTTCGTCTCTTGTTTGTGTTATGTGGGACTGCTAATCTATGGAGAT
GGTACAAGATTTGTGATTCCTCTGGAGTGCGGACTATAACCACCGACGAT
CAGCTACTGCCGTCTCTTGGTCGATCGAAGTGTGGGCTATATCATTGGTA
TGTCTGCATTGTTAT
UFO03367.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:47:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SLC5A11-RA | 2660 | CG8451-RA | 438..1543 | 9..1113 | 4960 | 97.4 | Plus |
| CG31668-RC | 1963 | CG31668-RC | 304..566 | 204..466 | 475 | 78.7 | Plus |
| CG33124-RD | 2094 | CG33124-RD | 353..616 | 201..464 | 420 | 78.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:47:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8201806..8202175 | 995..630 | 1530 | 97.3 | Minus |
| 2L | 23513712 | 2L | 8203087..8203250 | 443..280 | 820 | 100 | Minus |
| 2L | 23513712 | 2L | 8203314..8203469 | 283..128 | 780 | 100 | Minus |
| 2L | 23513712 | 2L | 8203526..8203637 | 128..17 | 560 | 100 | Minus |
| 2L | 23513712 | 2L | 8202231..8202300 | 630..561 | 350 | 100 | Minus |
| 2L | 23513712 | 2L | 8202468..8202535 | 509..442 | 340 | 100 | Minus |
| 2L | 23513712 | 2L | 8202358..8202411 | 561..508 | 270 | 100 | Minus |
| 2L | 23513712 | 2L | 2205487..2205612 | 443..318 | 255 | 80.2 | Minus |
| 2L | 23513712 | 2L | 2208611..2208690 | 280..201 | 205 | 83.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:47:10 has no hits.
UFO03367.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:16:14 Download gff for
UFO03367.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8451-RA | 427..1512 | 1..1086 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:39:44 Download gff for
UFO03367.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SLC5A11-RA | 431..1516 | 1..1086 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:40:48 Download gff for
UFO03367.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SLC5A11-RA | 431..1516 | 1..1086 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:40:48 Download gff for
UFO03367.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8202232..8202299 | 562..629 | 100 | <- | Minus |
| 2L | 8202358..8202409 | 510..561 | 100 | <- | Minus |
| 2L | 8202468..8202533 | 444..509 | 100 | <- | Minus |
| 2L | 8203087..8203246 | 284..443 | 100 | <- | Minus |
| 2L | 8203314..8203469 | 128..283 | 100 | <- | Minus |
| 2L | 8203527..8203637 | 17..127 | 100 | | Minus |
| 2L | 8201762..8202175 | 630..1040 | 95 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:39:44 Download gff for
UFO03367.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8202468..8202533 | 444..509 | 100 | <- | Minus |
| arm_2L | 8203314..8203469 | 128..283 | 100 | <- | Minus |
| arm_2L | 8203527..8203637 | 17..127 | 100 | | Minus |
| arm_2L | 8203087..8203246 | 284..443 | 100 | <- | Minus |
| arm_2L | 8202232..8202299 | 562..629 | 100 | <- | Minus |
| arm_2L | 8202358..8202409 | 510..561 | 100 | <- | Minus |
| arm_2L | 8201762..8202175 | 630..1040 | 95 | <- | Minus |
