UFO03368.5prime Sequence
1154 bp (1030 high quality bases) assembled on 2009-02-03
> UFO03368.5prime
CAGTCGACATGGCCAAGGACTTGAGCACTATGGGATGGGATTATCTGATG
TTTGTACTGTTTATAGCCCTCACCGTTTTGGGCCCGTTGTGGAAACGCAT
TTTTGGCAAAAAGAAGGAGCGCAGCAAGGCCGACTATGTTTTTGCCACCG
GCGGAGTTTCGATAGTGGCAGTCATGATTTCCATTGCCCGAGGAACCTTG
GGAGTGAGATCCGTGCTAGGCTATCCCAGTGAATTGTACTACCGCGGATC
GGCCATGTGGGAGATCATCTACGGCATGATGAGCGCCTATCCCATCGTTT
GCTTCATGTTCGTGCCCGTGTACTTTAATCTGGGCATCACCTCCGTCTAT
CAGTACATCGATCTCAGGTTCAAGAGCCGCACGGTGAGATGCCTGGCATC
GGCGACATATATCGTGCGGCAGATCTGCAACCTTGGCATCACCGTGTACA
CTCCCAGCGTGGCCCTCTCGACGGTGATTGGCATACCCTACTGGGCCTCC
ATTACGGGCATGGCCGTCATTTGCATATTCTTCACCATTATGGGCGGCCT
GAAGGCGGCTATCAACGCGGACGTCATCCAGACAGTGACCATTCTGGTTG
TCACTGTGGCGGTTTGTATCCAGGGAACTATCTCTACGGGCGGCGTGAAG
AAGGTTTACCAACTAAATCGGGACAATGGACGTCTCAACTTTTGGAACTT
CACGGGCGATATGACTGTCAGAGTGGATACCACATCGGCTTGGCTGGGCC
AACTGTTCATGTCCCTCTCCCAGATCGGCTGTCAGCAGAACTTTATGCAG
CGTTATGTCAGCCTCAAGTCGCTCAAGCAAGTGCGTCGAGTTATGCTGAC
CAATGTGCCTTTGGTCTTCTTCTTCTTTTCCATCTCCTGGATCTCTGGCA
TGGTCATCTATTCCACGTACATCAACTGCGATCCCTACGCCGAGGGCTAC
ATTAGAAACCCGATGAGATCTGCCATTCTTTGGGGAGGATCAGCTCGGTT
TTCTGCCCGGGTTTCGGTGGCCATTTCATGGCCCCTCTGTCATGGCGCCC
TTGCCTGGATGGTTCGAATCTGATCATGGCACCGGTTATTTGGGAGACCT
TCATCTCTCAGGTGGCGAAATCAAGGGACTTCGCACACGCAGCATCGAAT
CAGG
UFO03368.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:33:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7720-RF | 2471 | CG7720-RF | 192..1323 | 7..1130 | 5185 | 97.9 | Plus |
| CG7720-RE | 2607 | CG7720-RE | 328..1459 | 7..1130 | 5185 | 97.9 | Plus |
| CG7720-RD | 2758 | CG7720-RD | 479..1610 | 7..1130 | 5185 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:33:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18768871..18769084 | 220..7 | 1070 | 100 | Minus |
| 3R | 32079331 | 3R | 18761831..18762008 | 543..366 | 890 | 100 | Minus |
| 3R | 32079331 | 3R | 18760995..18761155 | 838..678 | 805 | 100 | Minus |
| 3R | 32079331 | 3R | 18760715..18760918 | 1040..838 | 785 | 95.6 | Minus |
| 3R | 32079331 | 3R | 18768658..18768809 | 369..218 | 760 | 100 | Minus |
| 3R | 32079331 | 3R | 18761601..18761738 | 679..542 | 690 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:33:34 has no hits.
UFO03368.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:16:12 Download gff for
UFO03368.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7720-RA | 141..1267 | 1..1121 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:36:22 Download gff for
UFO03368.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7720-RD | 474..1600 | 1..1121 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:13:15 Download gff for
UFO03368.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7720-RD | 474..1600 | 1..1121 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:13:15 Download gff for
UFO03368.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18768872..18769089 | 1..219 | 99 | | Minus |
| 3R | 18761832..18762006 | 368..542 | 100 | <- | Minus |
| 3R | 18768660..18768807 | 220..367 | 100 | <- | Minus |
| 3R | 18760699..18760917 | 839..1053 | 95 | <- | Minus |
| 3R | 18760995..18761154 | 679..838 | 100 | <- | Minus |
| 3R | 18761602..18761737 | 543..678 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:36:22 Download gff for
UFO03368.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14586421..14586639 | 839..1053 | 95 | <- | Minus |
| arm_3R | 14586717..14586876 | 679..838 | 100 | <- | Minus |
| arm_3R | 14587324..14587459 | 543..678 | 100 | <- | Minus |
| arm_3R | 14587554..14587728 | 368..542 | 100 | <- | Minus |
| arm_3R | 14594382..14594529 | 220..367 | 100 | <- | Minus |
| arm_3R | 14594594..14594811 | 1..219 | 99 | | Minus |
