UFO03369.5prime Sequence
1124 bp (1002 high quality bases) assembled on 2009-02-03
> UFO03369.5prime
CAGTCGACATGACGCGCGACGGCGAAATTCCAGCTATTTTCAATCCGAAA
AGAGTGCGCACTCCTTCCGTGGTGGTCACCGGCGACTCCTCGACGAATGG
ACCGTACAGCAACAATAGCACCGGCGGGGCGGGAGCCAGCAGCAGCACGG
CAGTGGCCCCCGGTTCGTCTGCCCAAAACGGCGGCAGTGGCAGCGGAGCA
GCGGGCAGCTGCGGGTTCAGCAACGTGCTCACCTCGAGCAATCCGCAAAT
AACCCACCAAGACTCGATATCGTCGAGCCAACAGGACCCCAATGAGGTGG
TCATCATCCCGGCGGACACACCAACGAGCGCACCGGGCAGCCACAATGCG
GCGCACCACTTCGGAGGCGGCGACTCCAGCGACACCCAGACGGAGCAGCA
GCAAGCCAACGGGCACGGCGAGGAGTCCGAGCTTCGCTTCCGAAAGTTGC
AGGCCTGCAAGGAGTCATGCTGCTCCGAACTGGCCCGGAAGATGTACTTC
GGAGTGTGCGTGACCATCCTGATGACCGCGTCGTGGGTGGGGGCCACCCA
CTGCATTAAGTACATGTACAAGTACCGTGCTCCGTACGACGACTTGCTGA
ACGACGACCAGGACACGTCCTCGAGCCGCGCGGACCTGAGCACGGAGCTG
GAGGATATACTGGCCATCAGCGACTCGTCGCTGCACCACGTCGAGGACGC
CACCGAGATGTTCAACATACCACCGCGCCAGCCGGTCTACTTCAGCGCCC
CCTTCTTCGCCGCCTGGTTCTTCACCAACTTCTCGCTGCTCTTCTTCCCC
ATCTACCTGCTGGGTCTGGTCTCCACCCGCAAGTGCGAGAAGCTGAGCGA
CATCCTTGGCGACGTGCTGCGAGGATTCCGGGAGCGCGGCTTCACAGTGG
TCGCTTCCTCAATCGCTGCCTCTGCTTCTGCATTTTGTGGCTGGTCACCA
CCTACCTGTACACCTGTCCCTGCACGTCTCTACGCCCACGGATGCCCTGG
CCCTTTTCGCCACCAACGGTGCATGCGTGTACTGCTATTCCTGGGTGATC
CTGCACCGACCAGTTCGTGGGCGTAAAATCCTTGTCATTTACTTGCGACC
AGGATTACGCTGTCCTTAGCTAAT
UFO03369.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:52:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42322-RN | 3657 | CG42322-RN | 276..1377 | 8..1104 | 5130 | 98.3 | Plus |
| CG42322-RJ | 3627 | CG42322-RJ | 276..1377 | 8..1104 | 5130 | 98.3 | Plus |
| CG42322-RI | 3614 | CG42322-RI | 263..1364 | 8..1104 | 5130 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:52:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20746820..20747303 | 8..491 | 2420 | 100 | Plus |
| 3R | 32079331 | 3R | 20747362..20747772 | 490..900 | 2055 | 100 | Plus |
| 3R | 32079331 | 3R | 20747836..20748011 | 899..1074 | 540 | 92.1 | Plus |
Blast to na_te.dros performed 2014-11-28 20:52:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 155..200 | 107..152 | 122 | 73.9 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9185..9230 | 107..152 | 122 | 73.9 | Plus |
UFO03369.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:16:10 Download gff for
UFO03369.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42322-RD | 265..1353 | 1..1089 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:43:28 Download gff for
UFO03369.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42322-RD | 271..1359 | 1..1089 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:32:13 Download gff for
UFO03369.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42322-RI | 258..1346 | 1..1089 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:32:13 Download gff for
UFO03369.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20747837..20748011 | 900..1074 | 94 | | Plus |
| 3R | 20746815..20747303 | 1..491 | 99 | -> | Plus |
| 3R | 20747364..20747772 | 492..899 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:43:28 Download gff for
UFO03369.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16572537..16573025 | 1..491 | 99 | -> | Plus |
| arm_3R | 16573086..16573494 | 492..899 | 99 | -> | Plus |
| arm_3R | 16573559..16573733 | 900..1074 | 94 | | Plus |
