UFO03375.5prime Sequence
1106 bp (1020 high quality bases) assembled on 2009-02-03
> UFO03375.5prime
CAGTCGACATGAGTTTCCTTGACGTTCGTTGCTTCGGAAAATCCATCGCA
AGAAAACTGAAAAGAGCGTGCGAAAGCAGAAAGGCCAATTTTTCACCCGA
AAGTTATATACCGCATCCAGTTGAAATGTCCGCCAAGACGTCGCCATCGT
CCACTTCTCGGGATGCCAACGTGGGATCCTCGAGTGCGATTCCCGTTCAG
ATCAAAAAAGAACTGCCCAGCGATGAGATAAAGGAATTCGCGCACAACAC
CATGAACGAGCTGCTCGGCTGGTATGGATTCGAGGGTGTGGATGTGGATC
GTCTCGACCTGACCGCCAAAACGTCGCGCCTGCTGCAAAGTGCCGCCGCC
GCAGCTGTGGCCAATCAGCAGAGCCACCAGCTTCACCAGTTGGAGCCGCA
TCCGAATCTGGAGCGGAAGCGGACCAGTCTGCTTCGCAGTAGCAGTCGCA
GTTCCTTGGCAGCGGCCTACCACAACAACAACAACAACAATAATAACAAC
AACAACGGCAGCAGCAGCAAGAACAACGGAGGAGTCGGCGGCGTAGGCGT
TGGGAGTGGTCGGAAGAGCGGGTTGATGAACTGCAGCAGCACCACCACCA
CGCCATCGGACCACGACACGCGAAGCTCACGGGAGGAGGATTCCAAGAGT
CCGCACTCCATCGGGAAGCCAGCGGGAGCTGCGCACACGGATGAGAAAAT
AGACTTCAGCAATTGCTGCTGGTGCCATCGACCGATTGCGGAGAATGCGC
CGGACTACCTGACCAGCTGCGACGGACCGCGCTACTGCTCCGAATCCTGC
TTCGCCCAGAGCCGGAGGGCATCCTTCAAGAAGGCCAAGACCTGCGACTG
GTGCAAGCATGTGCGCCACGCGGTTAGCTACGTGGACTTTCAGACGGCGC
CTCCCAGCTACAGTTCTGCTCGGAGAGTGCCTCACCAGTACAGATGCAGA
TCTCTGCACGAAACCCAGCGCACCTGACATGCATCGCACTGCGGATCAGC
ATGATGCGGCAGCGAGGCTGGCTGATAACGCGATCTGTGGCTCGAAACTG
CAGGATCGTCGACTGCGCTCAGTTTTGGGTTCCGTTCGCGCCTGTCGCTT
CATCCG
UFO03375.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sobp-RB | 2823 | CG8991-RB | 191..1257 | 8..1055 | 4880 | 98.2 | Plus |
| Sobp-RA | 3104 | CG8991-RA | 472..1538 | 8..1055 | 4880 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11829968..11830438 | 702..232 | 2355 | 100 | Minus |
| 2R | 25286936 | 2R | 11828883..11829109 | 926..701 | 1085 | 99.6 | Minus |
| 2R | 25286936 | 2R | 11837895..11838038 | 234..91 | 720 | 100 | Minus |
| 2R | 25286936 | 2R | 11839272..11839354 | 90..8 | 415 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:56:56 has no hits.
UFO03375.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:16:06 Download gff for
UFO03375.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sobp-RA | 172..1251 | 1..1067 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:22:54 Download gff for
UFO03375.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sobp-RA | 186..1265 | 1..1067 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:46:38 Download gff for
UFO03375.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sobp-RA | 467..1546 | 1..1067 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:46:38 Download gff for
UFO03375.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11828728..11829107 | 703..1067 | 94 | <- | Minus |
| 2R | 11829968..11830436 | 234..702 | 100 | <- | Minus |
| 2R | 11837896..11838038 | 91..233 | 100 | <- | Minus |
| 2R | 11839272..11839359 | 1..90 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:22:54 Download gff for
UFO03375.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7716233..7716612 | 703..1067 | 94 | <- | Minus |
| arm_2R | 7717473..7717941 | 234..702 | 100 | <- | Minus |
| arm_2R | 7725401..7725543 | 91..233 | 100 | <- | Minus |
| arm_2R | 7726777..7726864 | 1..90 | 96 | | Minus |
