UFO03376.5prime Sequence
1130 bp (1033 high quality bases) assembled on 2009-02-03
> UFO03376.5prime
CAGTCGACATGGCCAAGATAAACCTACTGCGACACCTCTTCCTGGCCCTA
ATGCTGTACAGTGCGGCCACGGCCAAGGAGCACCTGCGAATCCGAAGACA
GGCTGCGGAATCGGTGACTGCCGCAGCTCCGAATGCCAGTAAGGTGATGG
CCTCCGAGGAGATTAAGGACAAGACAGAGTGGCCCGGCGCCAAAGAAACC
TCCACCGAAATCAATAGGACTGAGAGGCCCGTAGAAAACGTGGAGACCCG
CAACTCGGGCTTCGACTTGCCGGCCGCCTCGGATTTGTCCAGCTCTCTGG
GTTCCGAGGAGGATAGCATCTACTACGACAATGCTCCCGTGGACTGCAAT
CCCGAGCTGGTGGGCTTTGAAATTGTGACAGGATACGTCTTCTCGGCGCC
CGAAAAGCTGATGGACTCCCAGCCGGGCACGCTAATGCTCACTGATTGCT
TGGACACCTGTAGGAAGAACAAAACCTGCCAGTCAGTGAACTACGAGACC
GGGCTTTGCGTGCTCTTCTCGGCACATGCTGATCAATTACCGGGTGCCCT
GACAAAGTCGCAGTTCCCCGTATTCACTATCTATGCCCAAAAATCATGCC
TGGCCGTGAAGCCCTGCTCCCGAGCCTGGTACGTCGATCGTGTTCAGAAC
TACAAGCTCAAGACGGAAGTTAAGCGTACCGTGTCGGTGGCGTCAAGACG
CGAGTGCTTTGAACTCTGCCTCGGCGAAAACGACTTCACATGCAGATCTG
CCAACTACGATCGCACCTCTGGAGCTTGCGAGCTGAGCGAACTGGATCGC
CTGACTCTGGCCGGCTCCCAGGCCTTCCAGGTGAACGATGGGTCGGATTA
CCTTGAAAATCACTGTGTCGATGACCCAACAAGCTCTGCGAATTCAAACG
TCTACCTGGTCGCATACTGAAGACGTGGACTCGTTTACCAAGAGTGAGCA
GCATTGACGAGTGCCGGGACTGTGCCTCAACTCGCCATATAGTGCATCGT
ACGACTACACGACACGGTGACATGGTGTGTAGATATCCCATCCAGTCTGC
CACCTGGCGATGTGCAGATCCTCTGGAGGGCCCGAGGCGTCGAACTATGA
CTGACTTCTGCCTCATGGACATCGAGTGCG
UFO03376.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:33:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| neo-RB | 3005 | CG7802-RB | 201..1321 | 9..1108 | 5070 | 97.9 | Plus |
| neo-RA | 2977 | CG7802-RA | 173..1293 | 9..1108 | 5070 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:33:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29822381..29822754 | 9..382 | 1870 | 100 | Plus |
| 3R | 32079331 | 3R | 29823373..29823626 | 744..992 | 1020 | 98 | Plus |
| 3R | 32079331 | 3R | 29823039..29823241 | 543..745 | 1015 | 100 | Plus |
| 3R | 32079331 | 3R | 29822819..29822982 | 382..545 | 820 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:33:05 has no hits.
UFO03376.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:16:03 Download gff for
UFO03376.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7802-RB | 220..1344 | 9..1111 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:36:04 Download gff for
UFO03376.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| neo-RA | 173..1297 | 9..1111 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:58 Download gff for
UFO03376.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| neo-RA | 173..1297 | 9..1111 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:58 Download gff for
UFO03376.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29822381..29822754 | 9..382 | 100 | -> | Plus |
| 3R | 29822820..29822980 | 383..543 | 100 | -> | Plus |
| 3R | 29823040..29823241 | 544..745 | 100 | -> | Plus |
| 3R | 29823375..29823626 | 746..992 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:36:04 Download gff for
UFO03376.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25648103..25648476 | 9..382 | 100 | -> | Plus |
| arm_3R | 25648542..25648702 | 383..543 | 100 | -> | Plus |
| arm_3R | 25648762..25648963 | 544..745 | 100 | -> | Plus |
| arm_3R | 25649097..25649348 | 746..992 | 98 | -> | Plus |
