UFO03378.5prime Sequence
1123 bp (1006 high quality bases) assembled on 2009-02-03
> UFO03378.5prime
CAGTCGACATGTCACCAACCGGACATATATCCAAATCAAAGACGCCCACG
CCACACGATAACGATAACAATAGCATCAGCGACGAGCGCGAAACATGGAG
CGGCAAAGTGGATTTTTTATTATCGGTTATTGGATTCGCCGTCGATTTAG
CAAACGTCTGGAGATTTCCCTATTTGTGCTACAAAAATGGCGGTGGCGCT
TTTCTTGTGCCCTACGGCATTATGTTGGTGGTCGGTGGCATTCCTCTGTT
CTATATGGAATTGGCCCTGGGTCAGCACAATCGTAAGGGTGCCATAACCT
GCTGGGGTCGCTTGGTGCCCCTCTTCAAAGGAATTGGATATGCCGTGGTG
CTGATAGCCTTCTATGTGGACTTCTATTACAATGTGATTATTGCCTGGTC
GTTGCGTTTCTTTTTTGCATCCTTCACCAACTCGCTGCCTTGGACGTCGT
GTAATAATATTTGGAACACACCAAATTGTAGACCGTTTGAGAGCCAAAAT
GCATCTCGTGTTCCGGTTATTGGTAACTATAGTGACTTGTATGCCATGGG
AAATCAAAGCCTGCTCTACAATGAGACATATATGAATGGTTCGAGCTTGG
ATACGTCAGCGGTTGGCCATGTGGAGGGTTTTCAGTCCGCAGCATCGGAA
TATTTTAACCGCTACATTTTGGAGCTGAACCGCAGCGAGGGAATCCATGA
CTTGGGCGCCATCAAATGGGACATGGCGCTGTGCCTTCTGATTGTCTACT
TAATTTGTTACTTCTCCCTGTGGAAGGGTATCAGCACTTCGGGCAAGGTT
GTGTGGTTTACTGCCCTCTTTCCCTATGCAGTGCTACTGATTCTTCTAAT
CAGAGGGCTCACACTGCCGGGATCTTTTCTGGGCATTCAGTATTATCTTA
CGCCCAACTTTAGTGCCATCTATAAGCTGAGTCTGGGTGGATGCTGCCAC
CCAGTGTTTTCTCATGGGTCCAGGATTTGAGTGCTGCTGCCTATGCATCT
TATATAATACCATAACAATGTTACAGGATGCTTTGTACCGTTCATAACTC
GCTACAGCTTTATAGCGCTTGTGAATTCTTCGTGCTGGCTAATGCCACCC
TTGATTAGATTGAGATGTTGCCA
UFO03378.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:51:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| DAT-RB | 3040 | CG8380-RB | 324..1425 | 9..1088 | 4950 | 97.8 | Plus |
| DAT-RA | 3040 | CG8380-RA | 324..1425 | 9..1088 | 4950 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:51:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16560380..16560751 | 1021..659 | 1420 | 96.5 | Minus |
| 2R | 25286936 | 2R | 16563770..16563957 | 196..9 | 940 | 100 | Minus |
| 2R | 25286936 | 2R | 16560809..16560982 | 658..485 | 870 | 100 | Minus |
| 2R | 25286936 | 2R | 16561043..16561199 | 485..329 | 785 | 100 | Minus |
| 2R | 25286936 | 2R | 16561261..16561397 | 331..195 | 685 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:51:28 has no hits.
UFO03378.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:16:01 Download gff for
UFO03378.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DAT-RA | 335..1445 | 1..1088 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:42:51 Download gff for
UFO03378.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DAT-RA | 315..1425 | 1..1088 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:31:44 Download gff for
UFO03378.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DAT-RA | 315..1425 | 1..1088 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:31:44 Download gff for
UFO03378.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16563771..16563965 | 1..195 | 98 | | Minus |
| 2R | 16560374..16560751 | 659..1025 | 96 | <- | Minus |
| 2R | 16560809..16560981 | 486..658 | 100 | <- | Minus |
| 2R | 16561043..16561197 | 331..485 | 100 | <- | Minus |
| 2R | 16561262..16561396 | 196..330 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:42:51 Download gff for
UFO03378.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12448548..12448702 | 331..485 | 100 | <- | Minus |
| arm_2R | 12448767..12448901 | 196..330 | 100 | <- | Minus |
| arm_2R | 12447879..12448256 | 659..1025 | 96 | <- | Minus |
| arm_2R | 12448314..12448486 | 486..658 | 100 | <- | Minus |
| arm_2R | 12451276..12451470 | 1..195 | 98 | | Minus |
