UFO03379.5prime Sequence
1144 bp (1035 high quality bases) assembled on 2009-02-03
> UFO03379.5prime
CAGTCGACATGAGTGCCAAGAGCAGGAGACCTGGCACCGGCAGCAGCCAG
ACGCCAAACGAGTGCGTCCAGGTGGTGGTCCGATGCAGGCCCATGAGCAA
CAGAGAACGCTCGGAAAGATCGCCGGAGGTGGTCAACGTGTATCCGAATC
GAGGCGTTGTGGAGCTGCAGAATGTGGTCGATGGCAATAAGGAGCAGCGC
AAGGTTTTCACCTACGATGCCGCCTATGATGCGAGTGCAACGCAGACGAC
GCTCTACCATGAAGTGGTCTTTCCCCTAGTCAGTTCCGTTTTGGAGGGAT
TCAACGGATGTATATTTGCCTATGGACAAACGGGCACTGGTAAAACCTTC
ACAATGGAGGGAGTACGCGGAAATGACGAACTGATGGGCATAATACCGCG
CACATTCGAACAGATCTGGCTGCACATTAATCGCACCGAGAATTTCCAGT
TTCTGGTCGATGTATCCTACCTAGAGATTTATATGGAGGAGCTGCGCGAT
CTGCTAAAGCCCAACTCTAAGCATTTGGAGGTGCGGGAACGTGGATCGGG
CGTTTATGTGCCCAATCTGCACGCCATTAACTGCAAGAGTGTCGAAGATA
TGATCAAAGTGATGCAGGTGGGCAACAAGAACCGCACAGTGGGATTCACC
AACATGAATGAGCATAGTTCAAGATCCCACGCCATTTTCATGATCAAAAT
CGAGATGTGCGATACGGAAACGAACACCATCAAAGTGGGCAAACTGAATC
TCATCGATTTGGCGGGCAGTGAGCGGCAGTCCAAGACAGGAGCATCAGCG
GAGCGGCTAAAGGAAGCCAGCAAGATTAATCTGGCACTCTCGTCGCTGGG
CAACGTGATCTCCGCCCTGTCCGAAAGTTCGCCACATGTTCCGTATCGTG
ACTCAAGCTGACGCGATTGTTGCAGATTCGTTGGGTGCAATTCCAGACAT
TATGATTGCCAACATTGGAACATCCAATTACATTATACGAAACGCTTACT
ACGCTGCGTACGCTTCGCGGCCAGTCATCCAGAATCAGCCGAATTAGAAT
GAGATCCCAGAATGCCAGTTGAAGGAGTACCCAGAAGAAATTGATCGACT
CAAGCGCTTATATAGTTCGCCACACGCGCCATGCAATGAAAGCA
UFO03379.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:53:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Klp68D-RB | 2971 | CG7293-RB | 158..1269 | 9..1106 | 5075 | 97.9 | Plus |
| Klp68D-RA | 2998 | CG7293-RA | 185..1296 | 9..1106 | 5075 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:53:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11795957..11796621 | 9..673 | 3325 | 100 | Plus |
| 3L | 28110227 | 3L | 11796725..11797173 | 672..1106 | 1435 | 94.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:53:01 has no hits.
UFO03379.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:15:59 Download gff for
UFO03379.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Klp68D-RA | 186..1311 | 6..1118 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:54:05 Download gff for
UFO03379.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Klp68D-RA | 182..1307 | 6..1118 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:55 Download gff for
UFO03379.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Klp68D-RA | 182..1307 | 6..1118 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:55 Download gff for
UFO03379.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11795954..11796621 | 6..673 | 99 | -> | Plus |
| 3L | 11796727..11797202 | 674..1136 | 92 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:54:05 Download gff for
UFO03379.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11789054..11789721 | 6..673 | 99 | -> | Plus |
| arm_3L | 11789827..11790302 | 674..1136 | 92 | -> | Plus |
