UFO03381.5prime Sequence
1104 bp (1004 high quality bases) assembled on 2009-02-03
> UFO03381.5prime
CAGTCGACATGATGACTTCGCCACGAAATCACATCGGAACCCTTCTTGTC
GTCTGGCTACTGGAGTTCTCAATGGTGATTAGCCAGACTGACACGGGCAA
TGCATTGATGGATATGCTCGAGATCTATCGTCGCGGTCAGGCGCAATTGG
ATCTGGAGAATCTGGACGAGGGTCAGGTCATAACGACGAAATATGATTTC
ATAGTGGTTGGTGCCGGCACAGCTGGTTGTGCCCTAGCCGCGCGACTCTC
CGAGAATCCCCGGTGGCGAGTGCTACTCCTGGAGGCCGGTGGTCCCGAGA
ACTATGCCATGGACATACCAATTGTGGCGCATCTCTTGCAGCTGGGCGAA
ATCAACTGGAAGTACAAAACGGAGCCATCGAATAGCTATTGCCTGGCCAT
GAACAACAATCGCTGCAATTGGCCCAGGGGCAAGGTGATGGGTGGCAGCT
CGGTGCTCAACTATATGATGTACACCAGGGGCAATCGCCGCGACTACGAT
CGCTGGGCACGTTTGGGCAATCCGGGCTGGAGTTACGAGGAGGTACTACC
CTATTTCAAGAAGTACGAGGGCAGCGTAGTGCCGGATGCCGATGAGAATC
TGGTGGGACGCAATGGGCCGGTGAAGGTGAGCTACTCGGAGACGAGGACT
CGCATCGCAGACGCCTTTGTGGGAGCCACCCAAGATGCAGGATTGCCGCG
AGGTGACTACAATGGAGATAAACAGATTCGTGTGTCCTATCTGCAGGCGA
ATATCTACAATGAGACCCGTTGGAGCTCCAATCGAGCGTATCTGTATCCC
ATTAAGGAAAGCGTCGAAATCTTCATGTGAAGAAGATGCCTTGATTACCA
AGATCTTGATTGATCCGCAGACGAATCGGCATTTGGTATATCGTCAAAAT
GGATGGCAAATGCAAAGATTTTGGCCAGAAAGAGGTCATTCTATCGGCGG
TGCATCATACCCCCCAGCTACTGATGCTCTCCGGCGTTGGGACCGCTAAC
ATTTGCGGGAGATGGGCATAAGCACTGCGATCTGCGTGGCTACAACTCAG
ATCCATAGCCTCCGCTATCAGCTTCTTTGTGCATGTGAGTCGCGTGCAAC
GAGC
UFO03381.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:32:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9519-RA | 2034 | CG9519-RA | 58..1177 | 8..1104 | 4835 | 97.1 | Plus |
| CG9521-RA | 2265 | CG9521-RA | 325..767 | 192..634 | 1105 | 84.1 | Plus |
| CG9518-RC | 3952 | CG9518-RC | 1327..1460 | 405..538 | 235 | 80.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:32:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14855280..14856304 | 1021..8 | 4505 | 98.2 | Minus |
| X | 23542271 | X | 14852503..14852945 | 634..192 | 1090 | 83.1 | Minus |
| X | 23542271 | X | 14865481..14865614 | 538..405 | 235 | 78.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:32:57 has no hits.
UFO03381.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:15:57 Download gff for
UFO03381.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9519-RA | 52..1177 | 1..1104 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:36:00 Download gff for
UFO03381.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9519-RA | 52..1177 | 1..1104 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:53 Download gff for
UFO03381.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9519-RA | 52..1177 | 1..1104 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:53 Download gff for
UFO03381.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14855185..14856307 | 1..1104 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:36:00 Download gff for
UFO03381.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14749218..14750340 | 1..1104 | 96 | | Minus |
