UFO03383.5prime Sequence
1115 bp (1001 high quality bases) assembled on 2009-02-03
> UFO03383.5prime
CAGTCGACATGCGTAGACGCGGCGTATACGTGATGCTGACGCTGTGCGGG
GTTTTAACCGCTGGGCTAACCGCCTTTCTTGTGATATTCCTCACCGGCGG
CCAGGGTGCCGATGCGTCCGAAACAGCTACGGTGACAGTGGAACTGTATA
ATGGCCAGGGGACGGTTCTTGGCAACTATGCCTACACAGCCTGGACGGAT
CGAGCCTTTATGCAGTTTCGGGGCATCCCCTTTGCCGAACCACCAATAGA
GGAACTACGTTTTCGGCCACCTGTGGCGCGCTCACCATGGACAGGCACCC
TCAACGCACTGAACTTTGGACAACGCTGCCCGGTGATAACAAATCTAGAT
AGTCAGATGTCTGATGCGGAACTCGAAGATTGCCTCACTCTGTCGGTATA
CACTAAAAATCTTTCTGCTAGCCAGCCTGTAATGTTTTATATCTACGGCG
GCGGCTTTTACAATGGCTCCTCCGAGGACCACCCACCGAACTACCTTCTG
GAAAAGGATGTTGTCCTAGTTGTACCTCAGTACCGAGTCGGAGCCCTCGG
CTGGCTATCGACCTACACGGAAGAGCTGCCCGGCAATGCGCCCATAGCCG
ATATCCTTATGGCCCTCGACTGGGTGCAAATGCACATAAGTAGCTTTGGC
GGTGACCCTCAGAAGGTTACCATTTTTGGGCAGAGTGCCGGCGCTGGAGT
AGCCAGTTCCTTGCTGCTGAGTCCCAAAACCGGCGACAATATGTTCAAGA
GAGCGATTGTGCAGTCAGGTTCGATCTTCGCCAGCTGGGCAATCAACAAG
GATCCGAAAGGCACAATCTAGACGTATCTGTATTCAGTTGGGATGTTCTG
GCTGTGAGCAACACGATCAGCTTGTGAAGTGTATTCAAAAAGCGAAAGTT
ATAGACATTCTAAAGGCCACGGCCTCAGAATCCTTTTCGCGATGTGGAGA
CTTCACGCATCCTCCCACAACAGCCCAGTGAGCTGGTGAAAGCTATCGCA
GAACGATTCTTATTCTGACGATCACTCACACGATGGTTCTTTTGTGCTAG
CAGCCATTATGATGGCGCTGGCTGCAGGTGCATGTGAGTTCATTAAGGTC
GTCAGGTTTCCAAGG
UFO03383.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:06:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Est-Q-RA | 1827 | CG7529-RA | 45..1167 | 9..1115 | 5050 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:06:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21502464..21503114 | 411..1052 | 2710 | 97.2 | Plus |
| 3L | 28110227 | 3L | 21501465..21501722 | 9..266 | 1290 | 100 | Plus |
| 3L | 28110227 | 3L | 21502165..21502309 | 266..410 | 725 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:06:03 has no hits.
UFO03383.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:16:08 Download gff for
UFO03383.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7529-RA | 29..1159 | 1..1115 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:25 Download gff for
UFO03383.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Est-Q-RA | 37..1167 | 1..1115 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:47:42 Download gff for
UFO03383.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Est-Q-RA | 37..1167 | 1..1115 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:47:42 Download gff for
UFO03383.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21501457..21501722 | 1..266 | 98 | -> | Plus |
| 3L | 21502166..21502309 | 267..410 | 100 | -> | Plus |
| 3L | 21502464..21503115 | 411..1052 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:25 Download gff for
UFO03383.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21494557..21494822 | 1..266 | 98 | -> | Plus |
| arm_3L | 21495266..21495409 | 267..410 | 100 | -> | Plus |
| arm_3L | 21495564..21496215 | 411..1052 | 97 | -> | Plus |
