UFO03386.5prime Sequence
1107 bp (1012 high quality bases) assembled on 2009-02-03
> UFO03386.5prime
CAGTCGACATGGCTAAGAAAATACCTTTTAACGTGGTGTTCGCCTCAGAC
GAGGATGTTAACTTTCCGGCTAGCGAGTTAAACAATCACGGCCCCACAGT
TCACGGATGGCGAAGTGCTCCGAACGGCAGCCTCACCTCACATGACATCA
TCCTCCGATTCCAGCAGCCGGCCAAGATCTATCGCATCCAGCTCCTGGCA
CACCAGTATCTTATACCTGAGAAAGTAGAACTCTGGCTGCACTACTCGCC
CAAATCCCTGCCCAGCACTCCATCCTCGCAGTACTTTGACTTTTTGGGTT
TTGTTGCCCTGGCGGATAATGCCAACACGAACTACAAGTCTCGGGAGCTG
CAGAGCGTAACCGTGTGTCCACGTAGGGGCACACATCTTAAGCTGCGTCT
GATTGGCGTCCAAGGAAACGACTACAATGACACAGGCCAGATTTCCCTAC
TAGCGGTAAATGTCCTGGGCGAGGATCTGGAAGTGGGGCCAAATAATGGC
AACGGAGAGGAGCACTTGGCCAACGAGGCCCCACCGTTGGACACGGCCAC
CGGAGAACTGGCCCTGGCCTCCGTCTGTGATGACCTGCTTTTCTCCATGT
ATGTGGAGGAGTCAATAGTGCAGACCATCCGAGAGTTGGAACAGCGAAAG
ATTTTGGCCGTTAACTCAGAAAGATTCGAGTACGCCCGCAAACTGAAGCT
ATGCATGACAGCTTTAAGGACTGCCGGAGAACGTTTGGGGCGCTATGCTC
TGGCCAAGAGGCAGGCTGTTCAGCAGGAGGACTTTACCACGGCCAGGCTA
CGCAAGGAGCAGATCGAGATGTACCGGGCGGCAGTACTTCGACAATTGCA
GTGCATCAGCTTCTGGAACCGCAGGTGTGACCTTAAGCTCCAATGACCAA
AGCTGCGAGATCTATGCGGGTGGGAAGCCCAGTCTGCCATCGCTCTAGCC
TGCAGATGTGCACAGGCACTTGCGGAAGCACCTCAGTCCCAGAGCATGAC
GAGTCTCAGCTTAGAGGACAATCTCGACGATGGCTTCCAGCTGTAACGAA
CAATACGTGAAGGCTCGTACCTGCCTCAGCACCGCTCTGCCCAACTTCTT
TGCAGGT
UFO03386.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:13:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10137-RA | 3227 | CG10137-RA | 81..1203 | 3..1106 | 4970 | 97.3 | Plus |
| CG10165-RD | 1440 | CG10165-RD | 366..537 | 216..45 | 860 | 100 | Minus |
| CG10165-RB | 1342 | CG10165-RB | 268..439 | 216..45 | 860 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:13:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19529094..19529907 | 217..1021 | 3630 | 98.4 | Plus |
| 2L | 23513712 | 2L | 19528774..19528945 | 45..216 | 860 | 100 | Plus |
| 2L | 23513712 | 2L | 19526766..19526811 | 3..48 | 215 | 97.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:13:21 has no hits.
UFO03386.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:15:56 Download gff for
UFO03386.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10137-RA | 80..1131 | 1..1041 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:59:40 Download gff for
UFO03386.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10137-RA | 80..1131 | 1..1041 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:45:42 Download gff for
UFO03386.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10137-RA | 80..1131 | 1..1041 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:45:42 Download gff for
UFO03386.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19528778..19528945 | 49..216 | 100 | -> | Plus |
| 2L | 19526765..19526811 | 1..48 | 95 | -> | Plus |
| 2L | 19529094..19529930 | 217..1041 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:59:40 Download gff for
UFO03386.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19526765..19526811 | 1..48 | 95 | -> | Plus |
| arm_2L | 19528778..19528945 | 49..216 | 100 | -> | Plus |
| arm_2L | 19529094..19529930 | 217..1041 | 98 | | Plus |
