UFO03388.5prime Sequence
1123 bp (1019 high quality bases) assembled on 2009-02-03
> UFO03388.5prime
CAGTCGACATGGACCGACTGGACTACAATTATCAGGAGAAGTTGGCAGAC
TTGCTGGATAATGAAAGAGAGGACGACGAGCCACATTTTCTGCAGCAGTT
GAGGAACTTTTACACCGCCTGTCGAAAACCTTTGAGCCAGGATCAAGTCC
TGCGCATACTGGAGCATCTGATCGTAATGGAGAATATCCAAAATGAAGAG
CTGTCCGTCGGCTTGACTGCCGCCTTTCGTCTTCAAGTACTCATAGATCT
AAATGACTCCAATACGTATGACATTTGGAAGCAGTTGATGTCCCACAGGA
AGCATTGGGATCCAAATACAACGAACAGGGAACCCTTAACTCGCGAAATG
TTTGACAAGCTATGGGCCAGCCTGCCAAAAATTCCCTTTCCGTTTAAGGA
GTACTATTGGCGCGAATTAAGCGAGCTGGAAGAGAAAATAATGAGCTATG
GAAGCGAGGACGATGGCTTTGATAGCGGTGATTTGGTTACGCGGATACCA
CCCTTTTGGATGATGCCCTGGCCAAATGGGAATATTACCTATGAAAATCT
TTCCCAGATGGCCCATTGGCTGGATATAAAAGCCAATGAGTTCATTCTCA
CATATATCTATATGCGATTAAAGCTAGTTGCGGAAGGAGTCTCAACGGAA
TCCTGGCATATAGATCGCGACCAGTGCGCCGAGCAGTCCAGACAGATCCT
CAGTCATCCTGCTGCATGGTTGGTAGAGAAGAATCATCCCAGGCTCAAGG
AGGAGCCAGTGCTGCAGGACATTTTCGCGGAGCTGAAGCAGCGCTTTGGC
CAAAAGCTTCTGGCGAACAGGAATAACTTTACTCGCAGCACACAGCACTT
TCTTTTGGGCAAATTGAAAAGGATGCGGCTGCGATTGAGCATCCTGCCCA
GAAATTCTTCGGCCCATCCATGGTGCGACGCATCGAAAGGCACTACAGGA
TGTCACATGATGCTAGCGATTATTTGGGAAATCTAAATATCGCTATCACT
CAGATCCCACAGAGTACGCCCACTATGGGTCATAGTCTCGCGCAGTGATC
AAGCGAATATCAGACGATTGATCCACCCAAGTGCTGGGAGAACCTTGCCT
CTGCTTCACATGCACGAATGCTA
UFO03388.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| frma-RG | 2975 | CG3239-RG | 161..1202 | 9..1038 | 4885 | 98.6 | Plus |
| frma-RF | 1930 | CG3239-RF | 161..1202 | 9..1038 | 4885 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5494841..5495772 | 992..65 | 4430 | 99.4 | Minus |
| X | 23542271 | X | 5495837..5495892 | 64..9 | 280 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:28:16 has no hits.
UFO03388.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:15:54 Download gff for
UFO03388.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3239-RA | 133..1126 | 2..992 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:47:13 Download gff for
UFO03388.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3239-RC | 133..1126 | 2..992 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:07:34 Download gff for
UFO03388.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| frma-RF | 155..1148 | 2..992 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:07:34 Download gff for
UFO03388.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5494841..5495772 | 65..992 | 99 | <- | Minus |
| X | 5495837..5495898 | 2..64 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:47:13 Download gff for
UFO03388.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5388874..5389805 | 65..992 | 99 | <- | Minus |
| arm_X | 5389870..5389931 | 2..64 | 93 | | Minus |
