UFO03389.5prime Sequence
1132 bp (1034 high quality bases) assembled on 2009-02-03
> UFO03389.5prime
CAGTCGACATGGGCAAGGATCGGGGCAGAGGACGTAGGAATAACCATTCC
GGGCCATACAACAAGAGCAACTGGCGTGGTCAGAAGAAGGATCGCCCCCA
AAACAATGGTGGCGGTCAGCGCAACAGTGCTCCACAACAGAAATCCACGC
TGCTGGAGACCCAAGTGGGCATTACGGAGTTCACTAACCCGGAGGCACCT
GGCTTCACGGGAATACTTAAGTCTCGCTTCTCTGATTTTCACGTGAACGA
GATTGATAGCAATGGAAAGGTTCTGGAACTGAACGATCTCAGTGTGCCTA
AAGTGGCTATTGTGGCTGTGGCCGAAAACGAACTGGACAACTGGCGGAAA
GAACTGGAGGCAGTAATCGGCCCGGAAGTTTGGCAGGATATAGCCAATCT
GGCTAAGGCCAAAAACGATCCCGCGATCGAGCAAAAGGTGGAGATTGATG
TGACCACTCTGGATAAGGAGCAGCGAACACAAGTCCACCAGATGATAAAA
CAGCTTTACAAGGGCAAGCTACTGTCCACAACCATTGGACAGCAGCAGGC
TAAGCCGAAGGTCCAGGAGGAGGCATCTTTGGAAAATAAGGATGCGGCTG
AAGGTGAAACCTCAACCCAGAAAGACTCACAGGTGCCGGCAGAGGAGAAG
AAGACTATAAAAGTATTTAAACCAAAGCCAGGACGCGGTGACAAACGCTG
GAGCTTTCCGGCGGATTACGTGACCTTCCTGGTGCACAAAACCAATTTGG
TTACCAGCGATGTGGCCTCTACTTTAGCAGCGCGACTGAACTTACGACCA
TCGCAGGTGAACTACAGCGGCATCAAGGACAAGCGGGCCAAAACCACCCA
GAAGTTCTCCGTCAAGCGTCGTACACCAGAGAGCATTTTGGTTGCAGCTC
GCTCCCAACGGAATGTTCATATCGGCACTTTGGATTCGAATCCAATACAC
TGAGCTAGGCGATTTGCAGGCAATCGTTTCGTATTGCCTTGCGACACATG
CCAGGAGAGCGAGAGAATCGAGCAGCACTGCAATCATTGAGACGCGGCTT
CATCACTACTATGGCTTGCAGCGTTCGCAACACGCGCCCAGGTCCACTAT
GGAGGTGGGGGTTGCTCTGCTAGACCGAATAC
UFO03389.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:21:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6745-RA | 2770 | CG6745-RA | 83..1212 | 9..1121 | 5095 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:21:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8510512..8510886 | 315..689 | 1875 | 100 | Plus |
| 3L | 28110227 | 3L | 8510258..8510451 | 122..315 | 955 | 99.5 | Plus |
| 3L | 28110227 | 3L | 8511102..8511314 | 791..999 | 865 | 98.1 | Plus |
| 3L | 28110227 | 3L | 8510085..8510203 | 9..127 | 595 | 100 | Plus |
| 3L | 28110227 | 3L | 8510939..8511042 | 687..790 | 520 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:21:55 has no hits.
UFO03389.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:15:52 Download gff for
UFO03389.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6745-RA | 48..1177 | 9..1121 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:13 Download gff for
UFO03389.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6745-RA | 83..1212 | 9..1121 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:05 Download gff for
UFO03389.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6745-RA | 83..1212 | 9..1121 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:05 Download gff for
UFO03389.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8510085..8510203 | 9..127 | 100 | -> | Plus |
| 3L | 8510264..8510451 | 128..315 | 100 | -> | Plus |
| 3L | 8510513..8510884 | 316..687 | 100 | -> | Plus |
| 3L | 8510940..8511042 | 688..790 | 100 | -> | Plus |
| 3L | 8511102..8511449 | 791..1121 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:13 Download gff for
UFO03389.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8503185..8503303 | 9..127 | 100 | -> | Plus |
| arm_3L | 8503364..8503551 | 128..315 | 100 | -> | Plus |
| arm_3L | 8503613..8503984 | 316..687 | 100 | -> | Plus |
| arm_3L | 8504040..8504142 | 688..790 | 100 | -> | Plus |
| arm_3L | 8504202..8504549 | 791..1121 | 93 | | Plus |
