UFO03390.5prime Sequence
1162 bp (1043 high quality bases) assembled on 2009-02-03
> UFO03390.5prime
CAGTCGACATGAAAAAGGGCAAGGGATCAAGCTCCCTTGGATCGAAGGAA
TCATCGGGGAGACCATCCACGGCAGTCCTGGTGTTCAAGAAGTGCGCTAG
ATTTGCGGACTCTTCAGAATCGGCGGAGATCCAGCAGGACGGCAAGGAGC
AACTGCCTGAGAGGCAAGACTCGCTGGATGCCAAGGAATCTGCAGGAATG
GAAAAAGAGGCGATTAGCAATCAGCCATTAAAGGATGAGCCATCGAAAGA
TGAACCTAACCAAAGCGAGGGCACTGCCATTTCCACCATACCGGCGATTG
ATAAACTACGTCGCTTCTGCTTTATTGGATCCACGGACGAGCCCGTCTAT
ACCACGCCCGCACTGGATCTTGTTGTCGAGAACAATTTCGCATCGCTAAA
GGAACTCTGCTCCCAAGTGAGTGAAGACGAGCTGGTCGAGTGCTTGTTGA
GCGTTTTGGGCAGCGAACCAAATGAGGAGCAACCTCCCCGACCCGACGAG
CCGCTCCTAATCCTGGCTGTTTTCTTTACCACGTGCGAAGACGAGAAGAA
GCGAAATGCGGTGCGTAATAGATTCACCGACCTGATCACCAGCGAATCGG
ATCTTCTACTGTTCGTCCAGTTGGTCAAGCGAGTCCAGAAGTTGCTCGAA
CGTAAAACGCCCTTCAATCGCACAGTGCGAAAGGCCGTCCTCAACTGGTA
TGGCACGAAATCGCTTGATCGCCTTCTCCACTTCTGGTCAATAGGCGATG
GAAATCGTTGGCCTGCGCATCGCGATCTACTGTACCGCCTCCATTTTCGG
CATGCCAATTTTTTACCGGAAATCATTGCTGCCTTAAGGCTGCTCTCATC
ATCGCCAAAGGAGCTATCGCAGTGGCCTGATTTTTTAACGCCCTTGACCA
GCTTTCGCGAAACTATTGAGGTGTTGTGAAGCTTCGGCTACTCCCGGATC
CCGAACAGCTATCTCCATTGTGAGAGTTGTCGCTGAGCTGGGAGCATGTG
CCTTTTCATTGCTTCACGACCCAGGCTGCGCATTTTCTTATTCCCACATG
GAGCTATGAGCACTTCTTCAGAAATGCACGCCCTCTCTCGGCGACTAACT
CCGAGTGCCCCTTGGCTGACATTGTCTGAATAAAAGCTAAGGCCAGACAG
GTTCCGCCCGGT
UFO03390.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:33:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10803-RE | 4744 | CG10803-RE | 191..1312 | 8..1119 | 5145 | 98 | Plus |
| CG10803-RA | 2794 | CG10803-RA | 191..1312 | 8..1119 | 5145 | 98 | Plus |
| CG10803-RD | 4798 | CG10803-RD | 191..1306 | 8..1119 | 5045 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:33:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 3486313..3487207 | 190..1076 | 3990 | 98.2 | Plus |
| X | 23542271 | X | 3485840..3486021 | 8..189 | 910 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:33:14 has no hits.
UFO03390.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:15:49 Download gff for
UFO03390.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10803-RA | 182..1279 | 1..1090 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:36:10 Download gff for
UFO03390.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10803-RA | 185..1282 | 1..1090 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:13:04 Download gff for
UFO03390.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10803-RA | 185..1282 | 1..1090 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:13:04 Download gff for
UFO03390.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 3485834..3486021 | 1..189 | 97 | -> | Plus |
| X | 3486313..3487222 | 190..1090 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:36:10 Download gff for
UFO03390.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 3379867..3380054 | 1..189 | 97 | -> | Plus |
| arm_X | 3380346..3381255 | 190..1090 | 98 | | Plus |
