UFO03391.5prime Sequence
1111 bp (1010 high quality bases) assembled on 2009-02-03
> UFO03391.5prime
CAGTCGACATGGATGACGTCGAACGAATTCAGAGCGAGAATGAGAATTTG
CGCAAGATTCGCAATCGCCTGATGCAATGGGAGTCCAAAACGGACCCGCT
GGCGGCTCTGAGTATCCAGCAAGAGGAGCACCTGGACGTCCTGACCAATC
TGTGGCGCGACAGCGGACCATCGGCACCGGCACCGACTACGCCCACCCAG
GTGGGTCCTACCGATTCATCGGCAGCTGCAACTTCGCAAAGCGGCGATGA
CATCAGACTACCTGCGGAGGGACTCCAGAACACCAATGAGTTTCTGCTTT
GGTTCGCGGACGTCAGCGCCGAGATCGAGCAACGTGGCGATGCCGACTAC
CACAAATACCTGCAGCAGCTGGAGCAGCGCAAAGCGGAGTGCTCCCACAT
GCTGGACCAGATCGCTGGGGCCATGGAGCGCCTGGGTGCCCTCTGCGACG
AGTACGACTTTGTGTCGCAAAAGACCAGCGCTCTGAACACGGCCAGCGAG
CAGTTGATCGAGGAGCAGGAGCGACTGCAGGAGCTGAGTCACGAGATTCA
ACGCCGTCTGCACTACTTCAGCCAGGTGGAGTTGCTCAACCAACGACTTC
AGAGCCCCACGCTTTCGGTGGCTAGCGAAGCGTTCCGGGAGTGCCTCAAC
AAGATCGACGAATGCCTAAACTACATCGAGGAGAATCCCAAATTCAAGGA
TGCGGCCGCCTACAATGTGAAGTACAGGCAGTGCCTGGCCAAAGCCTCGG
GTCTGGTGCGTAACTATGTGACGAGTGTGATAAACCAGGCAACCGAGGCC
ACGCTCCATCCCAAGACAATATGCCGGATGCCTCCGCTGCTCTCAAGGCA
CCAGATGCCGCATTCGCTCTGTACTACGGCAAATATCAAACGGCCGCGGC
AAAAGTGAAGCGGGTCGCCCAGTTGATTGAGTCCCGGTCGGACACAGCCT
CGACTACGCCACTAATGCGGATCTTCACAGCACTACTGCGCAAAGAGCAG
CGTTATGTCGCAGCAGTGAATCTGTCATACAAAACGGTAAGTGGCCCACA
AGGATCACTGCTCCTTCACCCGACGCTGCCCTTTTGTGCATGTTGCAGGA
CGAAACCGTGT
UFO03391.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:27:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cog3-RA | 2973 | CG3248-RA | 30..1148 | 9..1104 | 5035 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:27:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3456302..3456815 | 686..173 | 2570 | 100 | Minus |
| 2L | 23513712 | 2L | 3455843..3456244 | 1073..687 | 1355 | 95.5 | Minus |
| 2L | 23513712 | 2L | 3456870..3457035 | 174..9 | 830 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:27:59 has no hits.
UFO03391.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:15:47 Download gff for
UFO03391.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cog3-RA | 17..1109 | 1..1080 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:47:07 Download gff for
UFO03391.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cog3-RA | 23..1115 | 1..1080 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:07:24 Download gff for
UFO03391.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cog3-RA | 23..1115 | 1..1080 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:07:24 Download gff for
UFO03391.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3455837..3456244 | 687..1080 | 95 | <- | Minus |
| 2L | 3456302..3456814 | 174..686 | 100 | <- | Minus |
| 2L | 3456871..3457042 | 1..173 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:47:07 Download gff for
UFO03391.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3455837..3456244 | 687..1080 | 95 | <- | Minus |
| arm_2L | 3456302..3456814 | 174..686 | 100 | <- | Minus |
| arm_2L | 3456871..3457042 | 1..173 | 97 | | Minus |
