UFO03392.5prime Sequence
1121 bp (1039 high quality bases) assembled on 2009-02-03
> UFO03392.5prime
CAGTCGACATGAAGTTCGCCGAGCACCTGACGGCCCACATAACGCCCGAG
TGGCGAAAGCAGTACATTAACTATGAGGAAATGAAAGCCATGCTGTATGC
AGCCATCGAACAATCGCCCTCCGCAGAACTCGTGGAGCGCGAGATGGTGA
CGCGATACTTTGCCAAATTCGATGAGGAGTTCTTTCACTACTGCGACAAG
GAGCTGGCCAAGATCAACACATTCTACTCGGAGAAGATGGCCGAGGCGAC
ACGCAAATATGGCAGTCTGCGCAGCGAGTTGACCGAAGCCCTGGAAATGG
GACACCCAAAGAAACTGCCCGCGTGGAAGAGGCGAACGCCGCTGGGCAAG
AAGAATGTGCCGGCGCGCAAGATACAGGATCTCAAGTTGGCATTTAGTGA
ATTTTATCTGGGACTGATACTGCTCCAGAACTATCAGAACCTCAACTTCA
CGGGTTTCCGTAAGATACTTAAGAAGCACGACAAGTTGCTGAGCGTCGAC
TATGGTGCACGTTGGCGCACGGATCACGTGGAGGCAGCCCACTTTTACAC
CAACAAGGACATTGATCGGCTGATCCAGGAGACGGAGCAGGCTGTTACCC
AGGACATCGAGGGAGGAGATCGTCAGAGGGCAATGAAGCGGTTGAGGGTA
CCACCACTGGGCGAACAGCAGAGTCCTTGGACGACCTTCAAGGTTGGTCT
CTTTTCTGGCGCCTTTGTGGTGCTCTTCATTACGGTTGTGATCGCTGCCA
TGTTCTACGGATTCGGCGAGAACTGGCGGGCCGGAATGAGGATGTTCCGC
GCACCATTCCTCATCATCGAATGCCTCTTCCTTTGGGGCGTCAATGTCTA
CGGCTGGAGGTCGTCCGGTGTGAACACGTCCTCATCTTTGAGTTGGATCC
ACGAAATCACCTGTCCGAGCAAAACATCATGGAAGTGGCATCCGTGTTTG
GAGTTATCTGGGCTGCTGCGTCTGAGCTACATCTTTTGCGATCCCCTCGG
CATCCCACAGTACGCAGCTCGCTTTGCCTCCTACACATTGGATGGCCTGC
CCTTTTGCTGAATCCAAGAAGACGTTCAATCATGAAGCCGGGTTTTGGCC
ATAAGATCCTCATCGTTCATG
UFO03392.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:25:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10483-RA | 2238 | CG10483-RA | 108..1221 | 5..1114 | 5245 | 98.6 | Plus |
| CG7536-RD | 3537 | CG7536-RD | 721..960 | 8..247 | 540 | 81.7 | Plus |
| CG7536-RC | 3494 | CG7536-RC | 306..545 | 8..247 | 540 | 81.7 | Plus |
| CG7536-RD | 3537 | CG7536-RD | 1088..1647 | 384..939 | 460 | 73.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:25:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5919729..5920753 | 1098..76 | 4665 | 98.7 | Minus |
| 3L | 28110227 | 3L | 5921136..5921209 | 78..5 | 355 | 98.6 | Minus |
| X | 23542271 | X | 18080934..18081349 | 939..528 | 295 | 73.1 | Minus |
| X | 23542271 | X | 18081972..18082143 | 247..76 | 290 | 77.9 | Minus |
| X | 23542271 | X | 18082218..18082288 | 78..8 | 265 | 91.5 | Minus |
| X | 23542271 | X | 18081747..18081844 | 481..384 | 190 | 79.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:25:32 has no hits.
UFO03392.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:15:46 Download gff for
UFO03392.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10483-RA | 88..1203 | 1..1114 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:45 Download gff for
UFO03392.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10483-RA | 106..1221 | 1..1114 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:01:12 Download gff for
UFO03392.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10483-RA | 106..1221 | 1..1114 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:01:12 Download gff for
UFO03392.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5919699..5920751 | 78..1121 | 98 | <- | Minus |
| 3L | 5921137..5921210 | 1..77 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:45 Download gff for
UFO03392.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5912799..5913851 | 78..1121 | 98 | <- | Minus |
| arm_3L | 5914237..5914310 | 1..77 | 94 | | Minus |
