UFO03401.5prime Sequence
1142 bp (1019 high quality bases) assembled on 2009-02-03
> UFO03401.5prime
CAGTCGACATGCAGCGCCACAAGGAACTGTACAAGGAGCAATCGCTGGTG
CTGAGTCCGCGCAATCACTGCCAGGAGAACAGGGATCGGTTGCAGGCGGC
GCGCGCCAAAAAACGAGAGGATTGTTTTTATCAGAACCGCATCATCAGCG
TGAGCCCGACGCCCGTCAAAATAAAGCAATTGGCGGCGGCCCAAGCTGCT
CTGACCCAGGAAAATGTGGCACCCAAACTGGAGAGTCCGGAGCGGCTGGA
CACGAAGCCCGCAGAACTGCTGAAGGAATCCAACCCGAAGGTCTCCCGCC
AGAAGCTCTACTTACAACGCTACATGGAGTGGAAGATAGCCAAGACCAAG
GAGCATAAGCAGCAAGACCAGAAACGTCGAGGCGCAGCCATCAATGTGCC
GACAGTAAAACAATCAAAGGCCTTGCCCAAATCACAAACATTTCGGGTTC
CCGATAATCTGGCTTCTGCAAAGCAGAAGGAGGCGGCTCCCATGTTCCAG
CCTCCCAAGCGGTGTTCTCTCTACATGATTGCCAATCCGACGGGCAAGGG
AAAAGCCGCAGAACCGATTAAACCTTCAATACCCAAGCCAACGTCAGCAG
CAGCTCCTCCGTCATCCAATACCGTGGCTGCATCTTCCGCCTTGGCCAGG
CATAAATCAGCTGCTTCTGCAACAAAACATAGTGCCTGCAATTCGTCAGA
ACAACAATCCAGTGGCCTTGGCCAGGCAAAAAGCAGCTGCACGACCCATT
CCCAACACAACGAAGCAAACTACCAGTGTAAGGCAGCCTGGGATTGAAGC
GAAAAAGATCACTACCACCATACCCAGACCCACCCCAGCGACAGTCACGA
AAGCGAAAACGCCAGGCATACGACAACAGCCACCAGCCGTTCAGTACAAA
GCCAAGATTACCTGAGCCGCCAGCGCCACGGACAGCTAGACTGCCCAATG
TGTGTCCAAGCCGTTCGAGAAACCTTTAGGAAACAGGACCCAGTGACACG
ACGGGCGAATGTCGTGAAACACCGCCTTATCGTGGCGGAGGTGGTGCCCC
GTCAAGTCAAGGACACACTGGACGACCAGCAAGGGAGCAAGTTCCCTCCA
TACGATGAGCACAAGATAAAGGCCCGTAACGAGCTCAGACAA
UFO03401.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:29:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mars-RD | 4465 | CG17064-RD | 1539..2647 | 1..1105 | 5100 | 97.9 | Plus |
| mars-RC | 3540 | CG17064-RC | 614..1722 | 1..1105 | 5100 | 97.9 | Plus |
| mars-RB | 3825 | CG17064-RB | 899..2007 | 1..1105 | 5100 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:29:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13503028..13504076 | 1..1048 | 4855 | 98.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:29:01 has no hits.
UFO03401.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:02:02 Download gff for
UFO03401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mars-RA | 228..1340 | 1..1108 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:41 Download gff for
UFO03401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mars-RA | 100..1212 | 1..1108 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:56 Download gff for
UFO03401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mars-RB | 899..2011 | 1..1108 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:56 Download gff for
UFO03401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13503028..13504140 | 1..1108 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:41 Download gff for
UFO03401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9390533..9391645 | 1..1108 | 97 | | Plus |
