UFO03404.5prime Sequence
1128 bp (1005 high quality bases) assembled on 2009-02-03
> UFO03404.5prime
CAGTCGACATGGCGGAGAAGCCGCTGGCCGACTGCCCGGACTCTGGGCAG
GTCCGCAAGCGTCCCCGGCTGGAGGACGAGGAGCAGGAGCTCAAGGTGGC
CGGCTTTTCGCTGAGCGCCATCGAGGAAATGCGGCGGACCAGGGACAACG
AGCTGCAGAACGAACCCATGGACCAGCAACTGCGACAGTTCCAGGTTCTC
GACGAAGTCGGCTCTGGCAGCGATGAGGATGATGAGTCAGACAACGCTAG
CGAGCAGCAGGGCGGAAGGTATGGAGAAGGAGGCGACGAGGAGGAAGAGG
CGGCTGATGGTGACGGCGAAGAATACGATTCCTCGGAATTCGATGATGAC
GAGATCGAGAATCTGCTGGACGAGAAGCTGCCCGAAGAGCTCCGCGAGTC
AAAGCAGCCCAAATACGAGCAGCGTTTCAAGACTGTGCTGGAAGAAAAGC
GCCTCAACCACTTTGAAGTCCTACCCGAGGGATGGGTGCAGGTGACCCAC
AACAGTGGAATGCCGCTCTTCTTGCATCGCAAAACTCGCGTCTGTTGCGC
ATCGAGGCCCTATTTTCTCGGCACTGGAAGTGCCCGCAAGCATGCAGTGC
CCTTGGGAGCAATCCCCTGTCTTAACTACAGGCGGGCTTTGGAGGAAGAG
TCGGAGGTGGAGCAACAAAAGACGGATGGAGCGCCGCCAGTGGCTGTATG
TCCCATGGCCGGAGCTTCCGCTTTACCGGCCGAAGCCATGGACGTGGAGG
GAAAAGAGAACAACGAAGGCAGCACCGATTCCAAAACCCAACCAGATGGA
ATAACTGCCCTTATGCCGGCTGCTAAAATTGTTACGGTCAACGAGAATAC
CCAAAAGGAATCCATTACACCGGAGCAACTAAACACCTCCTTCCAGCAAA
CTCTTCAATTCAAGGTGATTCGTGTGCTGCGATTTCGGAGTTGGAATGCT
CGCCGCAAGTTCACAAAAACCGCAACACATCAAGAATATTCAACGACCCA
CGCTGCCGATGGCACTAAGCTTATTAAGTTTGAATACTAGCGAATGCTGG
CGAAGGATCACGAACCCGCCCGGTCGGAAGGAGGGACTAAGATCCAAATG
ACAGAACCTTCCTCTGCAATCCTGCACG
UFO03404.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:05:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pasha-RC | 2579 | CG1800-RC | 111..1236 | 9..1128 | 5180 | 97.9 | Plus |
| pasha-RA | 2847 | CG1800-RA | 562..1687 | 9..1128 | 5180 | 97.9 | Plus |
| pasha-RB | 2123 | CG1800-RB | 65..963 | 236..1128 | 4045 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:05:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31619508..31620153 | 443..1083 | 2810 | 98.1 | Plus |
| 3R | 32079331 | 3R | 31618538..31618769 | 9..240 | 1160 | 100 | Plus |
| 3R | 32079331 | 3R | 31619238..31619444 | 238..444 | 1035 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:05:02 has no hits.
UFO03404.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:05:21 Download gff for
UFO03404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pasha-RA | 555..1655 | 1..1095 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:32:49 Download gff for
UFO03404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pasha-RA | 555..1655 | 1..1095 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:47:10 Download gff for
UFO03404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pasha-RA | 555..1655 | 1..1095 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:47:10 Download gff for
UFO03404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31618531..31618769 | 1..240 | 98 | -> | Plus |
| 3R | 31619241..31619444 | 241..444 | 100 | -> | Plus |
| 3R | 31619510..31620152 | 445..1082 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:32:49 Download gff for
UFO03404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27444253..27444491 | 1..240 | 98 | -> | Plus |
| arm_3R | 27444963..27445166 | 241..444 | 100 | -> | Plus |
| arm_3R | 27445232..27445874 | 445..1082 | 98 | -> | Plus |
