UFO03406.5prime Sequence
1214 bp (1077 high quality bases) assembled on 2009-02-03
> UFO03406.5prime
CAGTCGACATGAACAACGACAGCCACAAATATAGCGACGCCGAGGAGGAC
GAAGAAGACCTGCGAAGTTCCGAGTGGACAAACGACTTCAAGAACCTCAC
ATTGAAGCACGAGATCTTTAAGGATATTAAACTGACACCCAAAGAGGACT
GTGATGACCTGGCACAAGTTATAGCAACCGCCAACGAAGAGGATGAACCG
GAGGACGAAGAGCCAGAGGAATACGATGAAGACGATTACGACGATATCGG
AGATGACTATGATACGTATGAGGAGGCCTATACGGGCTTTAACAAGCTTC
ACGTTCAGCCGCAGCTAACAAATGCCAGTGGAGGTGGCTCCGGCGGTGGC
GCTGGAGGTGCATCTGGTGGCTCACAACGCGTCAGCAGCTACCAACCAAA
CGAAAAGCTGTTGCGCCGCTACTCCGCCCGCATTAATGTAGAAAAGTACG
ATCCCACCACAAATATGAGCGCGCAGGCGGCCAACCGGCTGGTGAACTTC
GATCGGCGCGATAGGACACAGGTGCGTGACAAACACGACCGAGCCACTGC
GGAACAGGTAATGGATCCACGTACCCGGATGATACTCTTCAAGCTGCTGA
ATCGCGGAATGATACAGGAAATCAACGGCTGCATTTCTACGGGCAAAGAG
GCTAATGTCTATCACGCCGTTTCCAAAAATGGTGAAGAGGAGTTTGCCAT
CAAGATCTACAAGACGTCCATTCTAGTATTTAAGGACCGCGACAAATATG
TGTCACGCGAATTCCGGTTTCGACACGGCTACTGCAAGCACAATCCGCGC
AAAATGGTGCGTACCTGGGCGGAGAAGGAAATGCGAAACTACTTGCGAAT
GCGCAACGCTGGCGTTCCTGTACCGGAGCCAATCCTGTACGCTCACATGT
ACTGGTCATGCGGTTTTGCGGTCGCGACGGATGGCCTGCGCCAAAGCTTA
AGGATGTGAGCTCAGCACTTCAAAGGCGCGAGAGTTGTACAGGGATTGCG
TAGTCATCATGTGGCGCATTTACATCATGCCGTCTTGTGCCCGCTGATCT
TTCGAGTTTACATCTGCTGCAGATGTCAGCTGTCATATCGATGTAGCAGT
CATGGAGCACGATCATCGCATCTGACTCTGCCCAGATGACCAACATTCGA
GTTCTCCGAACGTGCGGGCACGATGACGGGGAGGACTTTTGATTCTTACG
CTCGACTATACCAG
UFO03406.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:31:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RIOK1-RB | 2121 | CG11660-RB | 176..1298 | 9..1117 | 5235 | 98.6 | Plus |
| RIOK1-RA | 2049 | CG11660-RA | 104..1226 | 9..1117 | 5235 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:31:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11647192..11648180 | 1053..69 | 4720 | 99.2 | Minus |
| 3L | 28110227 | 3L | 11648240..11648299 | 68..9 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:31:08 has no hits.
UFO03406.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:05:19 Download gff for
UFO03406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11660-RB | 165..1308 | 1..1130 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:51 Download gff for
UFO03406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11660-RA | 95..1238 | 1..1130 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:53 Download gff for
UFO03406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RIOK1-RA | 95..1238 | 1..1130 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:53 Download gff for
UFO03406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11647106..11648180 | 69..1130 | 98 | <- | Minus |
| 3L | 11648240..11648303 | 1..68 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:51 Download gff for
UFO03406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11640206..11641280 | 69..1130 | 98 | <- | Minus |
| arm_3L | 11641340..11641403 | 1..68 | 94 | | Minus |
