UFO03408.5prime Sequence
1101 bp (801 high quality bases) assembled on 2009-02-03
> UFO03408.5prime
CAGTCGACATGCCGCCAAAGTCAAGCAGCAAGAAAAACCAGGTTACTTGG
TACCACTGCGAGTCCTGCGGCGTCCACATTCCCTCGAAAGCGAGAGATAA
CCACGAGGGCTTATGCTTCGCCATCAGCCAGGATGATGTTGGTCCCGATT
CTGAGGCGGAGTACGTTCGCAGTGGAGCAATCTATACGAGAAGTCTTCAA
CAGCGTAATTTCGAGGTGGAGTCTCTGAAGGATCTGCCCACCAAGTATGC
CAATATGCTAGTCTTCGTCTCCGAGGGTGCGATGCAATTGGCACAGCTAC
ACATTGGACAACATGTGGTGCTGGAAGCTCCATCGACGGCGGAGCAGCCG
CTGGTTAGGATTGTATGGCCCACATCAGAGCAATTCCTCACCACAGTATT
TGTGAGCGAAGGGGATTTCAAACTCCATTGCACACAACTTCGAGGAAAGC
TACTCAAGATCTCTGCCTTGCATCCCAGTCGCCTCACTGCGGCTGCCAGC
ATTTCCCTGAAGCATGTAAACACCACAGAGACCTCCCTGAAGTCAGTACA
ACTGCAGGACGCCATTGCCCTTCTCAAAAGAGACATGGTCAATCGGGTAT
TCTACAAGGACAGTCTGATCCACATGAATTTCTTTTAACAAATCGGTGAC
TTTTCGCCTGGAGCGATGGCAGAGCACAGTGGAAGAGGCTCTAGCTGGTC
TGAGTCTCGAGTCCAAACCCTTGCAGTTCATCCAGGTTACCACCGTACCC
AAGCTCCACCTGATAACCGACGATGCCAATCATCAGGAGGAGGAGCAAAA
AATTAGTACAGGATCCCCTATGGTCAATTATGTGGGCTTGAATAGTCTAT
TTGCACCCGTTTTACGAAAGAAGGAGTACGCTCTTGGATTCCAACGTTGC
CTGCAGCCTTAGGGTTTCCCGCGGACTGCTTCTCTATGGCGCCACTCGCT
GTGCAAGTCCATGTTGCTGGAACCCTTGTGCGTCTGGTCGAAGTATCTAA
CCAAGACTGTTCTACCTTATTCCCCATATCAGTGTGCTAATTGTCTTTAA
TTTCCTGGTGCATACGTGATCATGAAACTTTGTGGCTTTCTTTGACCGGG
C
UFO03408.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:46:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5776-RB | 3392 | CG5776-RB | 48..1027 | 5..982 | 4235 | 95.9 | Plus |
| CG5776-RA | 2912 | CG5776-RA | 48..1027 | 5..982 | 4235 | 95.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:46:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12703995..12704404 | 414..5 | 2035 | 99.8 | Minus |
| 2L | 23513712 | 2L | 12703545..12703937 | 807..414 | 1815 | 98 | Minus |
| 2L | 23513712 | 2L | 12703314..12703391 | 982..906 | 280 | 93.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:46:09 has no hits.
UFO03408.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:05:18 Download gff for
UFO03408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5776-RA | 17..817 | 1..803 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:38:56 Download gff for
UFO03408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5776-RA | 45..845 | 1..803 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:28:29 Download gff for
UFO03408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5776-RA | 45..845 | 1..803 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:28:29 Download gff for
UFO03408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12703314..12703391 | 906..982 | 93 | <- | Minus |
| 2L | 12703445..12703458 | 893..905 | 92 | == | Minus |
| 2L | 12703549..12703936 | 415..803 | 98 | <- | Minus |
| 2L | 12703995..12704407 | 1..414 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:38:56 Download gff for
UFO03408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12703314..12703391 | 906..982 | 93 | <- | Minus |
| arm_2L | 12703445..12703458 | 893..905 | 92 | == | Minus |
| arm_2L | 12703549..12703936 | 415..803 | 98 | <- | Minus |
| arm_2L | 12703995..12704407 | 1..414 | 99 | | Minus |
