UFO03409.5prime Sequence
1140 bp (1053 high quality bases) assembled on 2009-02-03
> UFO03409.5prime
CAGTCGACATGGCCTTGCCATTGAGTGACCTGCTCATGATCGGCGGCGGC
GAGAAGAAATTGGCTGCCTGCCTGGTGCTGCTCCTGCTGGAGCTCTTCCT
GGAAGGCGCCGAGTCGACGGCCAGTCCAGCGGATATTGAGAACCATCTGG
AGCTGGGCAAGGAGTTCCTCGCCCGCGGACAGCTGTCGGATGCACTGACG
CACTACCATGCAGCTGTTGAGGGCGATGCCAACAACTATCTGACGCTTTT
CAAGCGCGGCACCGTCTATTTGGCGCTGGGCAAGACGCGCTTTGCCGTCC
AGGATTTCAGCAGGGTGCTGGAACTGAAGCCAGACTTTATGGCCGCCCGA
ATCCAGCGGGGTGTTGTGCACATGAAGAGCGGAGAGTACGAGCAAGCGAT
CCAGGACTTTGATCAAGTCCTTCAAGAGGAACCCAACAACGGCTTGGTGC
TGGAGCACTATTCCCGCTTGGCACCCGCCCAGGAGCAGTGGGTCCTTGTA
CAGCAGCTGATCCAATACAGTGATCACCAAAACGCCATCCCCATGATCAC
ACAGTTGCTAGAGATCTCGCCGTGGGCTGTGCCCTTCCGGCAGGCTCGCT
CTGATGCCTACATTGCAATCAATGATCCACTGTTAGCCATTGCTGACTTG
CGACAGGTGAACCGACTCACCCAGGACAGCACTGAGGGTCACTACAAGAT
TGCACAGCTGCTGTACACAATTGGCCACGCCACAAATGCCTTAAAAGAGA
TCCGCGAGTGCCTGAAGTTCGACCCGGAACACAAGCTCTGCTTCCCCTTC
TACAAGAAACTACGAAAGGTGGAAAAGCAGCTGGTTAACGCAGAGCAAGC
GCGTGAGGAGAAGCATTTTGCCGAGTGCATAGCCGCCGGAGAGGCAGTCC
TGCGTAACGAGCCGGAGGAGACGATGATCCGGTATGAGGACACAAGGTGC
TCTGCACTTGCTACACGGGCGACGAGCAGGTTGGCAAGGCTTTGCAACAG
TGCAGGAGCACCTGGATATTATGAAGGATGCTCAGGTCTACTGTGATCGT
GCTGACGCCATGCTGGGCACCGAATGGTACGACGATGCATAACACTTCCT
TCCAAGCAGCTTCTCGACTTGAAGGAAGACAAACACCCCG
UFO03409.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:47:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| P58IPK-RA | 2217 | CG8286-RA | 417..1531 | 4..1118 | 5305 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:47:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9587996..9588889 | 219..1111 | 4160 | 98.4 | Plus |
| 3R | 32079331 | 3R | 9587521..9587636 | 104..219 | 580 | 100 | Plus |
| 3R | 32079331 | 3R | 9587358..9587460 | 4..106 | 500 | 99 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:47:36 has no hits.
UFO03409.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:05:17 Download gff for
UFO03409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| P58IPK-RA | 418..1542 | 1..1129 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:40:00 Download gff for
UFO03409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| P58IPK-RA | 415..1539 | 1..1129 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:40:57 Download gff for
UFO03409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| P58IPK-RA | 415..1539 | 1..1129 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:40:57 Download gff for
UFO03409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9587356..9587459 | 1..105 | 98 | -> | Plus |
| 3R | 9587523..9587636 | 106..219 | 100 | -> | Plus |
| 3R | 9587997..9588903 | 220..1129 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:40:00 Download gff for
UFO03409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5413078..5413181 | 1..105 | 98 | -> | Plus |
| arm_3R | 5413245..5413358 | 106..219 | 100 | -> | Plus |
| arm_3R | 5413719..5414625 | 220..1129 | 98 | | Plus |
