UFO03410.5prime Sequence
1129 bp (1049 high quality bases) assembled on 2009-02-03
> UFO03410.5prime
CAGTCGACATGGATACGAAGAATCCCCCGCCGGTGACGAGCAGCTATCAC
CACCAGCGGGCGCCGCGGACGCCGGAATCGTACTTCAACGTGCCGGAGTC
GGTGGCCCTGCTGAACATCGTCAAGTCGGAGCGCATCCAGAGCGCGTTCC
AGTCGAACCGAAAGAACCATGCCAGCGTGTGGGAGATGGTCGCCGAGGTG
CTCAACCGCTTCAGTGCGCGGAAGCGAACGGCCAAGCAGTGCTGCAATCG
GTACGAGAACCTCAAGAAGATCTACACGCAGCTGAAAAAGAATCCCGAGC
GCCATGTGCGCCGCAACTGGCCGTACATGTTCCTCTTCAAGGAGATCGAG
GAGCAGCGCGGCGAGTGCTGGGGATCGAATGGCAAGCGTCTGGCGCTCAT
AACCAAAAACCACAACGAGCTATCCTACTACCAGCGCCGACGGCAGGCGG
CCGAGCTGGGAGTGCTGCTCAACAAGGACAACCTCACCCCGCACCAGCAC
AGCCTACTGCAGAGCCTCAGCCAGAGCCAGAGCCAGAGCCACTCGCACGC
CCACTCCACGGACTCCTCGCAGAGCGGGAGCAAGCTGGACCGCTTCCTGC
CCAATCACTTTGTGGAGGCGCAGCTCAGCGAGGTGGCCGGCCCGGTCGGT
GGCTCCGCATCCGGTGTATCCGGCATGTCCGCCGGCGGCTTCGACGAGAA
TCCCCTCCAGATGCAGATGGTTCAGGCAGCTGCTGCCGCTGCCGCCGTGG
CCGCCCATAAGCGACATGAGCTCCAGATGGCCAGCGTTGGCGGCGTTCAA
ATGACGCCCGAAGACGACGACGAGGATGAGCCCCAGCGGCCAGCATTTAA
ACACCACCTTCACGTCCTGTGTCATGGCCACGGCCTCGGCTTGGCCACGC
GCAATGGACGACTCTGGCGAAGCACCCGACTCGAAAAGGACTGCAATGGA
GCACTCAACATGCACCACAGACAACATCACACGAGACCACATATCAATGA
AGTCGGAGCCACTTTCGAGGGCGAGTTCAATCCGGACGACTCAGCTGATG
CGACGACTACATGGAGCGCAAAACCACTATTCGCGGGCATGGATGCCAAT
TACTGCCCCCCCGATGTTGATCGTCGACA
UFO03410.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:20:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| meso18E-RD | 2619 | CG14233-RD | 503..1637 | 9..1129 | 5145 | 97.9 | Plus |
| meso18E-RC | 2588 | CG14233-RC | 472..1606 | 9..1129 | 5145 | 97.9 | Plus |
| meso18E-RB | 3096 | CG14233-RB | 980..2114 | 9..1129 | 5145 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:20:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19708190..19709150 | 968..11 | 4625 | 99.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:20:17 has no hits.
UFO03410.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:02:04 Download gff for
UFO03410.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| meso18E-RA | 401..1534 | 9..1128 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:56:54 Download gff for
UFO03410.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| meso18E-RB | 980..2113 | 9..1128 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:57:53 Download gff for
UFO03410.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| meso18E-RB | 980..2113 | 9..1128 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:57:53 Download gff for
UFO03410.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19707536..19707604 | 1002..1064 | 91 | <- | Minus |
| X | 19708152..19709156 | 1..1001 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:56:54 Download gff for
UFO03410.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19601569..19601637 | 1002..1064 | 91 | <- | Minus |
| arm_X | 19602185..19603189 | 1..1001 | 98 | | Minus |
