UFO03413.5prime Sequence
1118 bp (987 high quality bases) assembled on 2009-02-03
> UFO03413.5prime
CAGTCGACATGTCCATTGCGAAGCGTGTGCAGCAATGGGCAACGTTCGCG
CGCACTTGGCACATTTACGATTGCACCTGGCAGAATCCATTCGAGTCGGC
AAAACTGGTTAAAACGCATTTATTGGGCCTCCAAAAGCCCATTTACCACC
CAATGATCTCTACTCGCGGCTTGTGCACTTCACACAAACTACTCCCGATT
TACCAAGTACAAAAACGCAACATGGGTCGCTTAGGAGTCGTGGATCCCAG
TTCTTACTCGCAGCCCGATTTGATCACCACTGAGCACAGTGCTCTCAACT
GGAAGATCGACTTTGCAGCAACCAAAATCCAAGGAAGCGTGCTCCATCGC
TTCAAGGTGTTGACTGCCAATCTGGACAAAATTCTCCTTGATGTCCGCGA
CATCAATGTAACCAATGCCACGCTGCTGGCCGGAGGCAGTGAGCTCCCGA
TCAACTTCTTTATCAGCGATGCCGTCGATGATATTGGCCAGAAGCTAACG
CTGGAGTTGCCATCTGGAACGGCTAAGGGAAGCCTTAACGTTCGCATCGA
TTACGAGACTTCAAGCAGCGCCAGTGGGTTGCAGTGGCTGAATCCCACCC
AGACTTTGGGCAAGGAGCATCCTTATATGTTCTCCCAATGCCAGGCAATC
CACGCTCGCTCGGTGATTCCCTGCCAAGACACGCCAGCTGTTAAGTTTAC
CTATGATGCCACAGTGGAGCATCCCAGCGAGCTCACGGCCCTGATGAGCG
CCCTTATCGATAAGAAGAACCGGGAAAGACACTATTCAAGCAGGAGGTGC
CCATTCCCGCTTATCTGGTGGCCATTGCCATTGGCAAATTGGTTTCCCGC
CCGCTGGGGGAGAACTCCAGTGTCTGGGCTGAGGAAGCCCCCGTGTATGC
CTGCGCCGAGGAGTTTTCCGAAACAGCTACCATGCTAAAGACTGCCACTG
AGTTGTGTGTTCGTATGTCTGGAAGCAGTACGATCTTCTGTGATGCCCCC
CTCATTCCCTTGGTGGCATGGAAGATCATGCTCACTCGTACTCCACTCTT
TGCCGTGATAGTCTCTGACGACGTGGTCAGAGATAGCCCAAGCTGACTGG
AATCTTGGACACAGACTC
UFO03413.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:29:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10602-RE | 2270 | CG10602-RE | 89..1211 | 9..1107 | 4960 | 97.2 | Plus |
| CG10602-RC | 2126 | CG10602-RC | 93..1067 | 157..1107 | 4220 | 96.8 | Plus |
| CG10602-RD | 2172 | CG10602-RD | 139..1113 | 157..1107 | 4220 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:29:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18856354..18856850 | 1022..531 | 2210 | 98.2 | Minus |
| 2L | 23513712 | 2L | 18857177..18857403 | 383..157 | 1135 | 100 | Minus |
| 2L | 23513712 | 2L | 18856916..18857064 | 532..384 | 745 | 100 | Minus |
| 2L | 23513712 | 2L | 18858952..18859077 | 156..31 | 630 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:29:57 has no hits.
UFO03413.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:05:15 Download gff for
UFO03413.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10602-RA | 53..1086 | 9..1035 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:13 Download gff for
UFO03413.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10602-RE | 89..1122 | 9..1035 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:19 Download gff for
UFO03413.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10602-RE | 89..1122 | 9..1035 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:19 Download gff for
UFO03413.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18856339..18856848 | 533..1035 | 97 | <- | Minus |
| 2L | 18856916..18857064 | 384..532 | 100 | <- | Minus |
| 2L | 18857177..18857403 | 157..383 | 100 | <- | Minus |
| 2L | 18858952..18859075 | 33..156 | 100 | <- | Minus |
| 2L | 18859137..18859160 | 9..32 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:13 Download gff for
UFO03413.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18856339..18856848 | 533..1035 | 97 | <- | Minus |
| arm_2L | 18856916..18857064 | 384..532 | 100 | <- | Minus |
| arm_2L | 18857177..18857403 | 157..383 | 100 | <- | Minus |
| arm_2L | 18858952..18859075 | 33..156 | 100 | <- | Minus |
| arm_2L | 18859137..18859160 | 9..32 | 100 | | Minus |
