UFO03414.5prime Sequence
1109 bp (991 high quality bases) assembled on 2009-02-03
> UFO03414.5prime
CAGTCGACATGGCGCCAAAAAAGTCCACCATTGTGCTCAATGTGGAGCAG
TTTATTCACGACATCGAGGAGCGCCCGGCCATCTGGAACCGCAATTTCCA
CTGCAACAAGGCCTTCCTCGAGCAGATGTGGGACGAGCTGAGCGGAGCGC
ACAAACTGCCAAGCGAGGTTTACGTTTTGGACGATGGCGCCGAGGTGGAT
CTGGATCTGGGAAACTATGAACGGTTTTTGGATGTTACCCTGCATCGGGA
CAACAACATAACCACCGGAAAAATTTACAAGTTGGTCATTGAGAAGGAGC
GCACTGGCGAGTACTTGGGCAAAACGGTTCAAGTTGTCCCACACATCACT
GATGCCATTCAGGAATGGGTGGAGCGCGTGGCCCAGACACCCGTTCAGGG
ATCTTCAAAGCCACAGGTGTGCATCGTGGAATTGGGAGGAACGATTGGTG
ACATCGAAGGCATGCCTTTCGTAGAGGCCTTCCGTCAGTTTCAGTTCCGC
GTAAAGAGAGAGAACTTCTGTTTGGCCCATGTGTCGCTGGTTCCGTTGCC
AAAGGCTACCGGAGAACCCAAGACCAAGCCCACACAAAGTTCGGTCAGAG
AACTGAGAGGATGTGGCCTGAGTCCCGATTTGATTGTCTGCCGATCGGAG
AAACCCATTGGACTGGAGGTCAAGGAGAAGATCAGCAACTTTTGTCATGT
GGGGCCGGATCAGGTGATATGCATCCACGATTTGAACTCCATTTATCATG
TTCCGCTGCTGATGGAGCAGAATGGTGTTATTGAATACCTAAATGAGCGC
CTACAGCTTAATATCGACATGAGCAAGAGGACCAAATGCTTGCAGCAATG
GCGAGATTTGGCGCGTCGAACGGAGACCGTTCGCCGTGAAGTTTGCCCTG
TTTTTCCTGGGAAAGTACCCCAAGTTCACGGATTCGTACGCCTCCGTAGT
TAAAGCCCTGCAACATGCCGCCCTTGCATGAATCGCAAACTGAACTGGTC
TTTATCGAGTCGTGCTGCTGAGAAGAAACTTTGCATTCTGAGCCGGCAGT
TACCACAGAAGTGCGAGCCATGCGATAGCATGCATCTAGTCCCGGCGAAT
CGGTTCCGT
UFO03414.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:20:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CTPsyn-RB | 2423 | CG45070-RB | 246..1342 | 9..1093 | 4930 | 97.4 | Plus |
| CTPsyn-RC | 2627 | CG45070-RC | 604..1546 | 163..1093 | 4160 | 97 | Plus |
| CTPsyn-RA | 2406 | CG45070-RA | 383..1325 | 163..1093 | 4160 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:20:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15111085..15111588 | 332..835 | 2520 | 100 | Plus |
| 3L | 28110227 | 3L | 15110816..15110986 | 163..333 | 855 | 100 | Plus |
| 3L | 28110227 | 3L | 15108805..15108959 | 9..163 | 775 | 100 | Plus |
| 3L | 28110227 | 3L | 15111653..15111866 | 836..1045 | 645 | 92.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:20:40 has no hits.
UFO03414.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:05:14 Download gff for
UFO03414.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6854-RB | 244..1304 | 9..1063 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:34 Download gff for
UFO03414.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CTPsyn-RB | 377..1437 | 9..1063 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:13:26 Download gff for
UFO03414.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CTPsyn-RB | 246..1306 | 9..1063 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:13:26 Download gff for
UFO03414.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15111653..15111883 | 836..1060 | 91 | -> | Plus |
| 3L | 15108805..15108958 | 9..162 | 100 | -> | Plus |
| 3L | 15110816..15110986 | 163..333 | 100 | -> | Plus |
| 3L | 15111087..15111588 | 334..835 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:34 Download gff for
UFO03414.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15104753..15104983 | 836..1060 | 91 | -> | Plus |
| arm_3L | 15101905..15102058 | 9..162 | 100 | -> | Plus |
| arm_3L | 15103916..15104086 | 163..333 | 100 | -> | Plus |
| arm_3L | 15104187..15104688 | 334..835 | 100 | -> | Plus |
