UFO03415.5prime Sequence
1141 bp (991 high quality bases) assembled on 2009-02-03
> UFO03415.5prime
CAGTCGACATGGGTGCCTATTTGTCCCATCCGAAAACGGATAAAACATCC
ACAGATCAGTTTAATGAATTGCTAGCCGTTGGAGCTAGCTCTATGCAAGG
ATGGCGGAACAGCCAAGAGGATGCACATAATTCTATTTTAAATTTTGACA
ACAACACATCGTTTTTTGCTGTGTATGATGGTCACGGCGGAGCTGAGGTA
GCGCAATATTGTGCTGACAAGTTACCACATTTTCTTAAAAACCTTGAAAC
CTACAAAAATGGACAATTTGAAGTGGCACTCAAGGAAGCATTTTTGGGAT
TTGACAAAACGCTGCTTGATCCATCGATAGTCAGCATACTAAAAATATTG
GCTGGGGAACACAACTTCGTGGATGCCGAAGCGGACGATTACGAAGAAGA
AGATTTAGCTGAATTGCAAGAGGAAAGCAATTTACCACTAAATGAAGTTC
TGGAAAAATACAAAGGTCTTCCGCAAAAAAAAGACTTGGATCTTAAGAGT
TCTGACCATAAAGAAAATTTCAAAATGCGCTCTCCATATTTTCGCGGGCG
CCGAGCTGCAGCATTAGCTGCTGAAGCTACTAATAAAGCTGTAATGGACC
CCTCTGCAAAGCCAGATGGTTCTTCCACCTCCGCAGCAGCGGCTGCAGCA
GCGCTATCCGCCGATGGTGTAGCTAATTCCCGTAATCCGAGCAATGTTGT
AAATCCTATGGCTGGGGCTGATAGCAATACCACTACCAGTATCAACGATT
TATCCACCAAGAATGCTGCATTAAAAGATGATTCTGTTAATGACCAAAAT
GAGGGCTCAATGGAACCGATTTCAAGCATACGTTGGTTTCTTCTAGTATA
AAAATTATTCGCTACTGGTTCTAACGACATGACCGAATCACTTATTTTCT
CGAAAACGAGTTCACAAACCCATCTACAGCAAAGAGTTTGAAAGGAATAT
AAACAGCTCCCAGACGATGAGTTCACAGACGATGATGCGGACTTATGAAG
AAAATGATAATGTTCAGAGTCCTGATACTTCATCCGCACAGCCTCTGACT
GCCTGAAATGATGACGACGGTGACAAAATGGTATTGAGGAAAGTGCATGA
AAAAAACTGATGAAAATCGATGCTAATGATATTTTTGTGCA
UFO03415.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:05:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10417-RB | 2361 | CG10417-RB | 116..1261 | 9..1141 | 5045 | 97 | Plus |
| CG10417-RA | 2538 | CG10417-RA | 293..1438 | 9..1141 | 5045 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:04:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5361644..5362569 | 1038..118 | 4155 | 98.1 | Minus |
| 2R | 25286936 | 2R | 5362627..5362738 | 120..9 | 560 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:04:59 has no hits.
UFO03415.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:05:13 Download gff for
UFO03415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10417-RB | 112..1215 | 9..1104 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:32:47 Download gff for
UFO03415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10417-RA | 293..1396 | 9..1104 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:47:09 Download gff for
UFO03415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10417-RA | 293..1396 | 9..1104 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:47:09 Download gff for
UFO03415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5361605..5362567 | 120..1074 | 97 | <- | Minus |
| 2R | 5362628..5362738 | 9..119 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:32:47 Download gff for
UFO03415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1249110..1250072 | 120..1074 | 97 | <- | Minus |
| arm_2R | 1250133..1250243 | 9..119 | 100 | | Minus |
