UFO03417.5prime Sequence
1151 bp (947 high quality bases) assembled on 2009-02-03
> UFO03417.5prime
CAGTCGACATGGGGGCATGCAATATAACAGTCTTATTGCTGGTCATCATG
TTGTGGCTACCCCATGGTCTGTCCATGGGCAATAGCTGCTCGGCATCGGT
GCTGGAGGCGCGTAGGTTCTTCGAGCTGGAAAATGAACAATTGCGAAGGC
GTTTCCATGAGGAATTCCTTTCCGGCTACAACTATAACACCAATGTAACG
GAGGCGAATCGCCAGGCCATGATCGAAGTGTATGCCCGCAATGCGGAACT
GAATAAGCGACTCGCGCAGCAGATAAAGTCCTCCGATTACGTTCAGTCCG
AGGATGCGGATATACGACGACAGGCCGAGCACCTATCCAAATTGGGTGCA
TCCGCTCTGAATGCCGACGACTACCTGGCCCTGCAGAATGCCATCAGTTC
GATGCAGACGAACTATGCTACCGCCACCGTGTGCTCGTACACCAATCGCA
GTGATTGCTCTCTCACCCTGGAGCCGCACATACAGGAGCGTCTGTCCCAT
AGCCGTGATCCTGCCGAACTGGCTTGGTATTGGCGGGAGTGGCACGATAA
GTCCGGAACTCCCATGCGGCAGAACTTCGCCGAGTATGTGCGACTGACGC
GCAAGGCATCTCAGTTGAATGGTCACCGCTCCTATGCCGACTACTGGGTG
CAGTTCTACGAGGACCCGGACTTTGAGCGACAACTGGATGCCACTTTTAA
GCAGCTGCTGCCCTTCTACCGACAGCTCCACGGCTACGTTCGCTTTCGTT
TGCGGCAGCACTACGGTCCGGATGTGACGCCAGCGGAGGGAAACATACCC
ATAAGCCTGCTGGGCAACATGTGGGGTCAGTCGTGGAACGAGCTGCTCGA
TTTGTTACTCCGTATCCGGAGAAGCCGTTTGTGGGCCGCGTAATGTCCAA
AAGGAAAACAGGGATAAGCCGGGGCAAAGCTGTTTGACCTGGGGGATAGT
TCTTCCAGCGCCTCGGAATGGCGCGCCCTCCTCCCAGTTCGTGAATCGAA
TGGTGCTCCCCCGCCCCACAAACGTCCGGGGTCTTTGCCCCCCCCCCGCT
GGGGACTTTTATCATAAATACTATTTTAGGAATCATAATGGTACACGATA
TGGATGACTCCTTACTTTAATGTATTGTCCTTTGAACCTAAGGATACTTC
T
UFO03417.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:15:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Acer-RB | 3198 | CG10593-RB | 346..1400 | 9..1061 | 4470 | 95.8 | Plus |
| Acer-RA | 2342 | CG10593-RA | 346..1400 | 9..1061 | 4470 | 95.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:15:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8522401..8522968 | 56..623 | 2840 | 100 | Plus |
| 2L | 23513712 | 2L | 8523442..8523706 | 621..884 | 1260 | 99.2 | Plus |
| 2L | 23513712 | 2L | 8522278..8522325 | 9..56 | 240 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:15:01 has no hits.
UFO03417.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:05:10 Download gff for
UFO03417.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acer-RA | 372..1365 | 1..993 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:21:55 Download gff for
UFO03417.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acer-RA | 338..1331 | 1..993 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:54:48 Download gff for
UFO03417.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acer-RA | 338..1331 | 1..993 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:54:48 Download gff for
UFO03417.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8522270..8522325 | 1..56 | 92 | -> | Plus |
| 2L | 8522402..8522966 | 57..621 | 100 | -> | Plus |
| 2L | 8523443..8523713 | 622..893 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:21:55 Download gff for
UFO03417.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8523443..8523713 | 622..893 | 97 | == | Plus |
| arm_2L | 8522270..8522325 | 1..56 | 92 | -> | Plus |
| arm_2L | 8522402..8522966 | 57..621 | 100 | -> | Plus |
