UFO03421.5prime Sequence
1125 bp (929 high quality bases) assembled on 2009-02-03
> UFO03421.5prime
CAGTCGACATGGTCACCATGGAAAACAGCGACGAGATAATGCAGATCCTA
GAGCGCTTTACGGATCTTAAACAAAAGGAGATCCCAAAGGAGCTGGAGGA
GTACCTACAGTATGTGGCCAAGACCGGCGACACCATCTTCAAGTGGTCCA
GCCTGAAGTACTTGTTCCGCGAGAAGCTGCTCAGCGTGATCAAGCACTTT
AATGAGGATTCGCCGCGTTTGGAGGAGATTCCCAACTATCCGAATGTGGA
CCCTTTCAACTACGAGACCATGAAGTCCTCGTTGCTGGAGCGCTTGGACC
TTTTCAATGCAGCTCCTTTTACCGTGCAGCGGTTGTGCGAGCTACTAATC
GATCCTCGGAAGCAGTACTCGCGCATCGATAAGTTTATGCGTGCTTTGGA
AAAGAATATTTTAGTGGTTAGCACAATCGATCCTGGACGCAAGCGTACCG
AAAGTGAGAATGGCGACTCGCTGGACTCAGTGGTCAACGGGGACCTCTCC
ATGGAGGTGAACATTGACATTGAAATGGAGAATAATAACGGTAACGCCGA
TGAGGGCTCATCTCCCGGCGCCGGTTCGGCAGGTTGTGCCCAGAAGGCAA
GCTGCCCGCGTTCGGACGACAATGATCAGCCCAAGGCCAAGAAGGCAAAA
CTGGAGATCGATGGTGAAGAGCGTTCGGAAGCGAGCGATGAAACGGACAC
AGAAGTGGCAACCAGGGTCAAAAATGAAAAGGATGAGAAGAATGACAACG
ATGAGACTGATTCGCCGCATGACGCTGCCGAGATCGAGGAGCCCGATGAA
GAGGTGGATGAGGCTGATCATGAGACCAAGACCACCAAGCAGTCTGCTCC
CTGCAGTCAGAATGAGGGCGAGCAGTGAGGAAAGTTTCCCATCATCTGCC
GATGACGAGCGGAGGACCCAATGTGAGCAATCCATAGAAGCTGAAAAGAC
TTGTTGCTCAGAAAAGAAAGGAGGAGGACAAAAGTGGCAATCAGCCCAAA
GAGAATTGTAAGAAGAACAGGTCTCCGAGTCTAATAACCTGACGGAAGGG
TGCCCTGTTATGCGAATAAGTCGTGTTCAAAAATCCTCCCCGCCTGGCCG
ATGGGGAAAACACAGGACCTGTCAA
UFO03421.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:28:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PPP4R2r-RC | 2409 | CG2890-RC | 144..1276 | 9..1125 | 4735 | 95.8 | Plus |
| PPP4R2r-RB | 2397 | CG2890-RB | 132..1264 | 9..1125 | 4735 | 95.8 | Plus |
| PPP4R2r-RA | 2426 | CG2890-RA | 161..1293 | 9..1125 | 4735 | 95.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:28:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10480082..10480651 | 413..978 | 2380 | 96.5 | Plus |
| X | 23542271 | X | 10479501..10479717 | 9..225 | 1085 | 100 | Plus |
| X | 23542271 | X | 10479835..10480024 | 225..414 | 950 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:28:54 has no hits.
UFO03421.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:02:00 Download gff for
UFO03421.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PPP4R2r-RC | 142..1130 | 1..983 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:37 Download gff for
UFO03421.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PPP4R2r-RA | 154..1142 | 1..983 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:52 Download gff for
UFO03421.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PPP4R2r-RA | 154..1142 | 1..983 | 97 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:52 Download gff for
UFO03421.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10479494..10479717 | 1..225 | 98 | -> | Plus |
| X | 10479836..10480024 | 226..414 | 100 | -> | Plus |
| X | 10480084..10480659 | 415..983 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:37 Download gff for
UFO03421.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10373527..10373750 | 1..225 | 98 | -> | Plus |
| arm_X | 10373869..10374057 | 226..414 | 100 | -> | Plus |
| arm_X | 10374117..10374692 | 415..983 | 97 | == | Plus |
