UFO03423.5prime Sequence
1094 bp (1048 high quality bases) assembled on 2009-02-03
> UFO03423.5prime
CAGTCGACATGGACTTCGCTAGCGTACTCGGTAAGAGCGAGGCGCATCAG
CGCACCATTATCCACCTGGACATGGACTACTTCTACGCTCAGGTGGAGGA
GATTCGGGATCCAACGTTGCGGTCGAAGGCCCTGGGCATTCAGCAGAAGA
ACATCGTGGTCACCTGCAACTATGTGGCGCGGGCCAAAGGAGTGACAAAA
TTGATGCTTATTGCAGAGGCACAGCGCATCTGTCCCGATTTGGTTCTTGT
CAATGGAGAAGACCTCGCCCCTTATCGGCAGATGTCGCAAAGAATCTTTG
ACCTCCTGCTTAACTACACTCCCCTAGTGGAGAAGCTAGGCTTCGATGAG
AACTTTATGGATGTGACTGCACTTGTAGAACTGCGACAGGCTCACGTTGC
TGAGGCCCTGTTGAGACCACCGGTGGGTCATACGTATCCGGCGGATGGTA
CTCCCTTGTCAAATTGCGATTGTGGCTGTGCCCAGCGGCTGGCCATCGGC
ACTCGGATCGCCCAGGAAATCAGGGAGGAGCTCAAGCTCCGGCTGGGAAT
TACCTGCTGCGCTGGAATCGCCTATAACAAGCTACTGGCCAAGCTAGTCG
GCAGTAGTCATGAGCCAAATCAGCAGACCGTTCTTGTTTCCACCTATGCA
GAGCAGTTCATGCGGGAACTGGGCGACCTAAAGCGAGTCACTGGGATTGG
GCAGAAGACGCAGTGCCTTCTCCTGGAGGCGGGTATGTCATCCGTCGAGC
AGCTGCAGCAGTGCGACATGGACGTAATGCGGAAGAAATTTGGATTTGAA
ACTGCCACCCGACTGCGAGATCTGGCCTTCGGCCGTGACACGAGCTTAGT
CCGTCCCAGCGGAAAACCCAAGACCATGGAATGGAAGATGCCTGTAAGCC
AATATCCGTGCGTACCGATGTGGAGGAAAGGTTTCGCATGCTGCTCAAGC
GGCTGGTGGAGCAAGTTGCAGAGGATGGACGCGTTCCCATTGCCATCCAG
GTCGTGTTGCGCAAGTTCGACTCGCAAAGAAGAGCAGCCACCGTGAGACA
AACAGCCACATTCTACCCTCCCTTTTTAGACTTCCATGGTGTCC
UFO03423.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| DNApol-iota-RC | 3144 | CG7602-RC | 85..1175 | 9..1094 | 5240 | 99.1 | Plus |
| DNApol-iota-RA | 2622 | CG7602-RA | 150..1240 | 9..1094 | 5240 | 99.1 | Plus |
| DNApol-iota-RB | 2544 | CG7602-RB | 72..1162 | 9..1094 | 5240 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8234266..8235224 | 9..966 | 4730 | 99.8 | Plus |
| 3R | 32079331 | 3R | 8235287..8235404 | 965..1078 | 395 | 94.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:19:25 has no hits.
UFO03423.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:05:16 Download gff for
UFO03423.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DNApol-iota-RA | 99..1193 | 5..1094 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:43:53 Download gff for
UFO03423.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DNApol-iota-RB | 68..1162 | 5..1094 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:02:10 Download gff for
UFO03423.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DNApol-iota-RB | 68..1162 | 5..1094 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:02:10 Download gff for
UFO03423.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8234262..8235222 | 5..964 | 99 | -> | Plus |
| 3R | 8235287..8235420 | 965..1094 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:43:53 Download gff for
UFO03423.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4059984..4060944 | 5..964 | 99 | -> | Plus |
| arm_3R | 4061009..4061142 | 965..1094 | 94 | | Plus |
