UFO03426.5prime Sequence
1123 bp (989 high quality bases) assembled on 2009-02-03
> UFO03426.5prime
CAGTCGACATGAGTGTTTTATCAAAATATGTTGACCGGATTGCAGAAAAG
TGTGAACATAATGGGTTTACAAAACACGCTTTTAGCTATGCTCTAGTAAC
TAGTGCTATCCTAGCACTTACCATTAAAGTTACTATCCCTTACGTAAAAA
ACGTAAATACTACGTCTAGTGTAAGGACCCAAAAAGGAAAAACCAATGGC
CAACTTTCACCATCGACAAGAGATAGCTCAGAAGAGGATTTCAAGCTTGC
AGAGGCCGAAAAGTTATTGGTTGCACAGCAGCTTAAAAAAAAAGCTACAA
ATAATTTAGTTGAGCCTGGTCTAAATAAGGAGTTTTTAAAACATTTGCAA
ATGTTGGCCAAAATAATGATTCCTCAGGCCTTCTGCTATGAAACAGGATT
ACTAAGCGTTCATACTTTTTGCTTGATTTCTCGAACATTTCTTAGTATTT
ATGTTGCCGCATTGGAGGGAGCTCTTGTTAAATTTATAGTTCGAAAGGAT
ATTAAGCAATTTGCCCTTGTATTGCTTAAATGGTTTGGAATTGCTATCCC
TGCTACTTTCGTTAATTCTATGATACGGTTTCTCGAAAGTAAACTGTCTC
TGGCGTTTCGAACTCGGCTTGTGCGTCACTCATATCGGCTCTATTTTAAA
AACCAAAATTACTACAGAGTATCAAATTTGGACGGACGCATTGAAAACGC
GGATCATAGACTTACGGAAGATATTTCTGTGTTCGCAAATTCTGTAGCTC
ATTTGTATAGTAGCCTGACTAAACCATGCTTCGATCTGATGCTTATTGGC
TTGGCACTAATGAGATCGTCTAAAAAATGAAAGCTGACATTATAACTGGA
CCAGCATTATCAATCGGGGTTATTGCCCTTACAGCCCATATATCACGAAT
TGTCTCATCGAAGTTCGGACAGCTGGTATCGGAAGAAGCAAATAGAAATG
GGTATTTAAAACATAATCACTCCCGGCTAATAACAAATGCCGAGAATTGC
TTTTTACGGAAGTCTTAGTGGAAATGCAGCAGCTAAGCAGGCTACACCGC
CTGTAATCAATGACTACATTTATCAAGCTGTTTAATGCTGACATTTTATG
AAAAGTTGGTCGTACTGGATGAT
UFO03426.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:11:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2316-RH | 2614 | CG2316-RH | 132..1202 | 9..1068 | 4880 | 97.7 | Plus |
| CG2316-RC | 2773 | CG2316-RC | 291..1361 | 9..1068 | 4880 | 97.7 | Plus |
| CG2316-RD | 2709 | CG2316-RD | 227..1297 | 9..1068 | 4880 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:11:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 188578..189179 | 610..9 | 3010 | 100 | Minus |
| 4 | 1348131 | 4 | 188229..188372 | 849..707 | 655 | 98.6 | Minus |
| 4 | 1348131 | 4 | 188002..188170 | 1014..848 | 585 | 91.1 | Minus |
| 4 | 1348131 | 4 | 188425..188528 | 709..606 | 505 | 99 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:11:13 has no hits.
UFO03426.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:01:55 Download gff for
UFO03426.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2316-RA | 165..1235 | 1..1060 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:58:17 Download gff for
UFO03426.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2316-RD | 218..1288 | 1..1060 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:44:36 Download gff for
UFO03426.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2316-RD | 218..1288 | 1..1060 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:44:36 Download gff for
UFO03426.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 188230..188369 | 710..848 | 98 | <- | Minus |
| 4 | 188425..188523 | 611..709 | 100 | <- | Minus |
| 4 | 188578..189188 | 1..610 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:58:17 Download gff for
UFO03426.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 209051..209149 | 611..709 | 100 | <- | Minus |
| arm_4 | 208856..208995 | 710..848 | 98 | <- | Minus |
| arm_4 | 209204..209814 | 1..610 | 99 | | Minus |
