UFO03428.5prime Sequence
1112 bp (1001 high quality bases) assembled on 2009-02-03
> UFO03428.5prime
CAGTCGACATGGATCAGTTGTACCTGGAGATCGAGATCAGCACTCAAAAA
GAGACCACCATTTATACTGGTGTGTCCTCGTTCTTGGCTTTGTTTACTTA
CAAATTTTTGAAAGATCCCAAAAATGTGCGAGTAAACTTCGTTTCCACAA
AGATCGAAGGCGGTAAAATAGCTTTACGGAGTTCCCAACTCAAAAAGGAA
CTGACCGACCGGCACATCACATGCAGGGATGCCGCATCCTTGCCTGCCAT
CCAGGATCTAAAACTTCCAATCTACGAGAAGGACGGAAATACATTCATAG
CAGGAACGTGTGCCGTTTGCCGAGAGCTTATTGCAAGACAACCAAATGAG
GAACTCAAGAAACTTTTAGGCTTTAAGGGAAGCTGCCTCTTGGCTCCGTC
AGAAGCATCGATTTGGACTAAGTTCTGTGAGGTGGATTTAGTGGCTGTTG
TCAGTAAACTTCATAGTGGGCAAGTTTTGGAATTCGTCCCCCAAGAAGTA
GTGAGGTTCGAGCAGCACATGAACGAACCGGTGAGGATGCATAACATCTA
TAAACAGGCCAGAGAGCAGGCCAATCAGACTGAGAATGGCGGCAAGGTCA
AGAGGAGAGAACGAGTGCAAATCAAGTGCACTACACCTAAGGAAGAGCTG
CTTATTGAGCACCGCTTCGCCGAGGGCATCAGTTTCACAATTGCGGATAT
AATTTTGTACCCCCTTTTGAGAATTGTCTTCCAACATTGCGGGCAGATGC
TGCCCCATTTTCCACTCACTAGTACCTGGTTCAGCGAGATCGACTCTTTC
GGCGATAAATGCGCCAGGGTTCTAAGAGATCTTTATGTGCCGCAAGCAAT
TAAGACCCCTCCCGGAGAACTGGGAATCCCCGACTGCGAGGCACCATCCC
TATTAAACCGATCCCAAGCGATACAAGCCAAGAAATCGGATTACACTAGT
CAGTTGGAGTTGGAGCGGCTCTAAGTAAGCTTTCCCCGCTGCAACTGCAT
TTAATTCCGATCGAGCACACCTATGGCCGCCGCTGATCGACTGGGGCCGA
TTGAGCCACTCATGCTAGAGTCACCGCTGCCCAGAAGACCGACCTAACGA
CACAGCTAAGAC
UFO03428.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:45:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10428-RA | 1921 | CG10428-RA | 115..1201 | 9..1083 | 4985 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:45:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18949428..18949894 | 322..788 | 2335 | 100 | Plus |
| 2L | 23513712 | 2L | 18949200..18949372 | 150..322 | 865 | 100 | Plus |
| 2L | 23513712 | 2L | 18949945..18950211 | 787..1045 | 850 | 94 | Plus |
| 2L | 23513712 | 2L | 18948998..18949141 | 9..152 | 720 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:45:51 has no hits.
UFO03428.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:01:53 Download gff for
UFO03428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10428-RA | 102..1175 | 9..1071 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:38:42 Download gff for
UFO03428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10428-RA | 115..1188 | 9..1071 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:28:20 Download gff for
UFO03428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10428-RA | 115..1188 | 9..1071 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:28:20 Download gff for
UFO03428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18949947..18950240 | 789..1071 | 93 | | Plus |
| 2L | 18948998..18949141 | 9..152 | 100 | -> | Plus |
| 2L | 18949203..18949372 | 153..322 | 100 | -> | Plus |
| 2L | 18949429..18949894 | 323..788 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:38:42 Download gff for
UFO03428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18949203..18949372 | 153..322 | 100 | -> | Plus |
| arm_2L | 18948998..18949141 | 9..152 | 100 | -> | Plus |
| arm_2L | 18949429..18949894 | 323..788 | 100 | -> | Plus |
| arm_2L | 18949947..18950240 | 789..1071 | 93 | | Plus |
