UFO03433.5prime Sequence
1123 bp (1006 high quality bases) assembled on 2009-02-03
> UFO03433.5prime
CAGTCGACATGTCATATGTACGCCAGCTGAAGCGGCAGAAAATGTCCCAG
GCGAAGAAGTTCGGCGATGGCGATCCGTTCAACTACCAGGAGCTCAACAT
CATCGGCGAAGGTGCCTATGGAACGGTTTACAGAGCCCGCGATGTGATCA
CCGGCAACATAGTGGCGCTGAAGAAGGTTAGGATATCGCTGAACGAGAAC
GGTGTGCCAATGTCCACGCTGCGGGAGATTTCGCTGCTGAAGCAGCTGAA
TGCCAGCAATCATGCGAATATTGTCAAACTGTACGAAGTATGCCAGTTTC
TGGAGCGCGACGGCCAATTGCTGATTCTGTTGGTTTTCGAACATGTGGAG
CAGGATCTTTCGGATCTTATAGACAGACTTCCCAAATCGGGCATGTCGCC
GCCCACAATTCAGCGCTTGTCAAGGGAACTACTGACCGGTGTGGACTTCT
TACACTCACACCGTATCATCCATCGGGATCTTAAGCCGCAAAACCTGCTG
GTCTCCTCGCAGGGCCACCTCAAGATCGCCGACTTTGGCTTGGCCAAGAC
CTACGGTTCGGAGATGAAGCTCACCTCCGTGGTGGTCACCTTGTGGTACC
GCGCACCCGAGGTTCTGCTCGCCCAGCCCTACAACAGCACCGTGGACATC
TGGAGTGCCGCCTGCATCATCTTCGAGATGTTCAATCGGCGCGCCCTATT
CCCGGGCACCTCCGAAAAGAATCAGCTGGACCGCATCTTCGAACTGACCG
GTAGACCCACCGAGCAACAGTGGCCACAGACCATTTCCGTGGCCCTGGAA
CACTTTCCCCAGCGGCATCCAAAGAGACCAAAAGACTTTTGCCCACACCT
GCGCAAGTTCGCCGATGATCTGTTGAATAAAATGCTTTCCTACGACCTCC
ACCTGCGACCATCCGCCTTGGCCTGTTTGGAGCACGATTACTTTCAGCAG
GAACCCCTAGCAAGCTTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGG
TAAGGTGTCTAATCATTATCATATCATAATCTACATCCAACTAGCCTAAG
AGAATCTGTCATGACTATGCTGGATTCTTCACAACAAAACGCCCGCGGGC
ACCGAAGCGTCTGAACAATTCCA
UFO03433.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:28:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cdk4-RE | 1600 | CG5072-RE | 234..1184 | 9..959 | 4725 | 99.8 | Plus |
| Cdk4-RD | 1447 | CG5072-RD | 81..1031 | 9..959 | 4725 | 99.8 | Plus |
| Cdk4-RB | 2026 | CG5072-RB | 660..1610 | 9..959 | 4725 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:28:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16584347..16584678 | 411..742 | 1660 | 100 | Plus |
| 2R | 25286936 | 2R | 16582869..16583036 | 110..277 | 840 | 100 | Plus |
| 2R | 25286936 | 2R | 16584148..16584287 | 274..413 | 685 | 99.3 | Plus |
| 2R | 25286936 | 2R | 16584744..16584879 | 743..878 | 650 | 98.5 | Plus |
| 2R | 25286936 | 2R | 16580913..16581018 | 9..114 | 530 | 100 | Plus |
| 2R | 25286936 | 2R | 16584952..16585032 | 879..959 | 405 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:28:46 has no hits.
UFO03433.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:01:50 Download gff for
UFO03433.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdk4-RB | 635..1592 | 1..959 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:33 Download gff for
UFO03433.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdk4-RA | 428..1385 | 1..959 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:47 Download gff for
UFO03433.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdk4-RB | 653..1610 | 1..959 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:47 Download gff for
UFO03433.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16580906..16581015 | 1..111 | 97 | -> | Plus |
| 2R | 16582871..16583036 | 112..277 | 100 | -> | Plus |
| 2R | 16584152..16584287 | 278..413 | 100 | -> | Plus |
| 2R | 16584350..16584678 | 414..742 | 100 | -> | Plus |
| 2R | 16584744..16584879 | 743..878 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:33 Download gff for
UFO03433.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12468411..12468520 | 1..111 | 97 | -> | Plus |
| arm_2R | 12470376..12470541 | 112..277 | 100 | -> | Plus |
| arm_2R | 12471657..12471792 | 278..413 | 100 | -> | Plus |
| arm_2R | 12471855..12472183 | 414..742 | 100 | -> | Plus |
| arm_2R | 12472249..12472384 | 743..878 | 98 | -> | Plus |
