UFO03435.5prime Sequence
1113 bp (1022 high quality bases) assembled on 2009-02-03
> UFO03435.5prime
CAGTCGACATGTCAGCACGCCGCGTCACATTGAACACACGCGTTTCGCGC
GCCTCCACCTCCACGCCGGTGGGCGGGGCATCCACCTCGTCAAGGGTGGG
CGCCACCTCACCCACCTCGCCCACGCGCACCAGCCGGCAGCAGGAGAAGG
AGGAACTGCAGCATTTGAACGATCGCCTGGCCTGCTACATCGATCGCATG
CGCAACCTGGAGAACGAGAACAGCCGGCTCACCCAGGAACTGAATCTCGC
CCAGGATACCGTCAACAGGGAGACCTCTAATCTGAAGGCGGTCTATGAGA
AGGAGCTGGCCGCCGCTCGCAAGCTGCTCGATGAGACCGCCAAAGAGAAG
GCCAAGCTTGAGATCGATATCAAGCGTCTGTGGGAGGAGAACGACGACTT
GAAGCCCAGACTCGACAAAAAGACGAAGGAGGCTACCGTGGCAGAGAACA
ATGCCCGCCTGTATGAGAACCGCTACAACGAGGTGAATGGCAAGTACAAC
CAATCGTTGGCCGATCGCAAGAAGTTCGAGGATCAGGCCAAGGAGCTCGC
TCTGGAGAACGAACGCCTGCGCCGCCAACTGGATGATCTTCGCAAGCAGC
TGGAGGCGGAGACGCTGGCCCGCGTCGATCTGGAGAACCAGAACCAGAGC
CTGCGCGAGGAGCTGGCCTTCAAGGATCAGGTGCACACCCAGGAGCTCAC
CGAGACCCGATCCCGTCGCCAGATCGAGATCAGCGAGATCGATGGCCGAC
TGTCGCGTCAATACGAGGCCAAGCTGCAGCAATCGCTCCAGGAACTGCGT
GATCAGTACGAGGGTCAAATGCGCATCAATCGCGAGGAGATCGAGCTGCT
CTACGACAATGAGATCCAGACCCTCAAGGCTGCTGCCAATAGGGCTGCCC
AGGGATCCGCTCTTGCACCGAGGAAGTCCGTCTCATGCGCACCAAGATCG
ATGGCTTGAACGCCAAGCTACAGAATCTGGAGGACACCAATGCTGGCTTG
AATGCTCGCATTCGGTGCTGGAAAACCTCTTGGACACGGAGCGCAGCGCC
ACACCAGTACATCGCCTCCTTGAAAGCCGAACCTCAGCGTATGCGCCGAC
CGAGAGGGCTTCA
UFO03435.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| LamC-RB | 2450 | CG10119-RB | 147..1250 | 9..1110 | 5260 | 98.7 | Plus |
| LamC-RA | 2367 | CG10119-RA | 147..1250 | 9..1110 | 5260 | 98.7 | Plus |
| Lam-RD | 3191 | CG6944-RD | 564..1060 | 360..856 | 225 | 71.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14572252..14572849 | 1004..408 | 2910 | 99.5 | Minus |
| 2R | 25286936 | 2R | 14575225..14575625 | 409..9 | 2005 | 100 | Minus |
| 2R | 25286936 | 2R | 14572087..14572182 | 1096..1004 | 255 | 91.7 | Minus |
| 2L | 23513712 | 2L | 5543491..5543580 | 144..233 | 210 | 82.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:11:58 has no hits.
UFO03435.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:01:56 Download gff for
UFO03435.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LamC-RA | 178..1282 | 9..1112 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:06:19 Download gff for
UFO03435.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LamC-RA | 147..1251 | 9..1112 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:41:17 Download gff for
UFO03435.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LamC-RA | 147..1251 | 9..1112 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:41:17 Download gff for
UFO03435.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14572253..14572847 | 410..1003 | 99 | <- | Minus |
| 2R | 14575225..14575625 | 9..409 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:06:19 Download gff for
UFO03435.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10459758..10460352 | 410..1003 | 99 | <- | Minus |
| arm_2R | 10462730..10463130 | 9..409 | 100 | | Minus |
