UFO03438.5prime Sequence
1134 bp (943 high quality bases) assembled on 2009-02-03
> UFO03438.5prime
CAGTCGACATGGACATGGCCAGGAGCATTTTTGGCCGCGACCATGAGGGT
TACGTGGGCCGTGAAGAGCATACGCGCAAACTGCAGAACCTGGGCTCGGA
AGACGATCTGGGAGAGCTGCCGCCTATGATGGAGGAACTAAGTGTGGCCG
ATGGCCTGCGACCAAATCCCGGTGGGCCATTCTCCGCTCTTACCGCCTCC
ATGTGGCCACAGGAAATCCTAGCCAAGCTGGGCGGTGGCGCGGAATTGGC
TTCCGGCCCAAACGACCAGCCGGAGTACCGTTTTGACGAATTTGGCTTCC
GGGTGGAGGAGGAGGACGGTCCGGAGCAGAGCTCCAACAAATTGCTGAGC
ATACCCTTTGTAGAGGACGCGCAGCAGCGATTGCAGTGGATCGCCCACCT
GGAGTTCTCACACAACAAGGAGGCTGCCGAGCTGAGCTGGGAGCATGTGG
ATGTAATGCTCCCACGCACAGAAAAACTGCGCAATATGGTCCGTCAGGGT
ATCCCGCACACGTTGCGTGCCCAGATGTGGATGCGTCTATCAGGAGCGTT
GGCCAAGAAGCAAAAGAGCGAGACCAGCTACCACGATATAGTTAAAGCTT
CTAGCAATGACCAGCTGATGACTTCGAAGCAGATCGAGAAGGACCTTTTG
CGCATCCTGCCAACAAATGCCTGCTTTAGCAATCCGAATGGGACAGGCAT
TCCCCGATTGCGCCGCATTCTGAGGGGCATCGCGTGGCTTTTTCCTGACA
TTGGCTACTGTCAGGGCACCGGAGTGATCGTTGCCTGTCTGCTTCTCTTC
ATGGAGGAGGAGAACGCCTTTTGGATGATGGCCACCATTGTAGAGGATCT
GCTGCCAGCTTCCTACTACAGCTCAACTCTTCTGGGAATTCAAGCCGATT
ATCTTCCTGATGCACACGCTTTTTTGCTCACTACCTGAGCAGCGGGACGA
GTCCTTGGGTAAGCACGACATCGAGCTGTCTTTAATCACGCTGCATTGGT
TCTCACGCTTTTGCCACGTGGTGCATATGAAGGATTCTTGTGCGTATCTG
GGACTGGTTCTTTACGAGGCTCCATCGTGCCTGTTCAGTGACTCTGGCAT
GCTCTAGGTGAGGGAACAAATCTAAAGACATCTC
UFO03438.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:45:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12241-RA | 2986 | CG12241-RA | 155..1286 | 8..1134 | 5115 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:45:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15219545..15220068 | 74..597 | 2605 | 99.8 | Plus |
| 3R | 32079331 | 3R | 15220128..15220596 | 596..1063 | 1880 | 96.2 | Plus |
| 3R | 32079331 | 3R | 15219410..15219476 | 8..74 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:45:51 has no hits.
UFO03438.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:01:45 Download gff for
UFO03438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12241-RA | 140..1280 | 1..1134 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:38:59 Download gff for
UFO03438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12241-RA | 146..1286 | 1..1134 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:40:08 Download gff for
UFO03438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12241-RA | 146..1286 | 1..1134 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:40:08 Download gff for
UFO03438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15219401..15219476 | 1..74 | 94 | -> | Plus |
| 3R | 15219546..15220068 | 75..597 | 99 | -> | Plus |
| 3R | 15220130..15220671 | 598..1134 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:38:59 Download gff for
UFO03438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11045123..11045198 | 1..74 | 94 | -> | Plus |
| arm_3R | 11045268..11045790 | 75..597 | 99 | -> | Plus |
| arm_3R | 11045852..11046393 | 598..1134 | 95 | | Plus |
