Clone UFO03441 Report

Search the DGRC for UFO03441

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:34
Well:41
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/Transcriptmbo-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO03441.5prime Sequence

260 bp (215 high quality bases) assembled on 2009-02-03

> UFO03441.5prime
CAGTCGACATGTCGCTCACCGATGTCTTGGAATTGAACAAAACGGAGTTG
TTCGCGAAGATTCGCAATGGGTTGCCCGTGGTGCAAAGGACTCAGAACCT
GCTGGACTGCAAGGACGATCTGCTCTTTGCCTGGCACGCGAAGGACAGCT
GTCTGTTGGTTCGCAACTGGCGCTCATCGCTGGCGGCAAAGGTGAATATC
CAGTTTCAGAACACTGGATTCCATCGAGCTTGGTGAGCTGGAGGTGGACC
GCGTTGCTTG

UFO03441.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:16
Subject Length Description Subject Range Query Range Score Percent Strand
mbo-RA 2566 CG6819-RA 52..296 9..254 1145 98.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12678757..12679001 254..9 1070 98.4 Minus
Blast to na_te.dros performed 2014-11-28 20:15:15
Subject Length Description Subject Range Query Range Score Percent Strand
Max-element 8556 Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). 8076..8133 31..91 100 65.6 Plus
invader2 5124 invader2 INVADER2 5124bp 4333..4368 27..62 99 75 Plus

UFO03441.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:01:42 Download gff for UFO03441.5prime
Subject Subject Range Query Range Percent Splice Strand
mbo-RA 38..292 1..260 96   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:42:13 Download gff for UFO03441.5prime
Subject Subject Range Query Range Percent Splice Strand
mbo-RA 46..300 1..260 96   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:59:24 Download gff for UFO03441.5prime
Subject Subject Range Query Range Percent Splice Strand
mbo-RA 46..300 1..260 96   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:59:24 Download gff for UFO03441.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12678752..12679007 1..260 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:42:13 Download gff for UFO03441.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8504474..8504729 1..260 96   Minus