UFO03441.5prime Sequence
260 bp (215 high quality bases) assembled on 2009-02-03
> UFO03441.5prime
CAGTCGACATGTCGCTCACCGATGTCTTGGAATTGAACAAAACGGAGTTG
TTCGCGAAGATTCGCAATGGGTTGCCCGTGGTGCAAAGGACTCAGAACCT
GCTGGACTGCAAGGACGATCTGCTCTTTGCCTGGCACGCGAAGGACAGCT
GTCTGTTGGTTCGCAACTGGCGCTCATCGCTGGCGGCAAAGGTGAATATC
CAGTTTCAGAACACTGGATTCCATCGAGCTTGGTGAGCTGGAGGTGGACC
GCGTTGCTTG
UFO03441.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mbo-RA | 2566 | CG6819-RA | 52..296 | 9..254 | 1145 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12678757..12679001 | 254..9 | 1070 | 98.4 | Minus |
Blast to na_te.dros performed 2014-11-28 20:15:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Max-element | 8556 | Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). | 8076..8133 | 31..91 | 100 | 65.6 | Plus |
invader2 | 5124 | invader2 INVADER2 5124bp | 4333..4368 | 27..62 | 99 | 75 | Plus |
UFO03441.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:01:42 Download gff for
UFO03441.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mbo-RA | 38..292 | 1..260 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:42:13 Download gff for
UFO03441.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mbo-RA | 46..300 | 1..260 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:59:24 Download gff for
UFO03441.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mbo-RA | 46..300 | 1..260 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:59:24 Download gff for
UFO03441.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12678752..12679007 | 1..260 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:42:13 Download gff for
UFO03441.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8504474..8504729 | 1..260 | 96 | | Minus |