UFO03442.5prime Sequence
1104 bp (1021 high quality bases) assembled on 2009-02-03
> UFO03442.5prime
CAGTCGACATGTCGGATCTCGATTGGGACGATCCAAACTATGTCGAGAAG
CCGGCGGTGCATCAGGAGTACTCCAAGCCGAATAATAAGTACGAAAGGAG
TATCCGGCGAGATGGTAACTCACGTGCATACAAAGGAGATCGAAATGACT
ACGGCGGAGAAGGACGAGGCTATCGCGCTAAACGCAATGATTATGGCGGT
GGACGTCGCGACAATCGGGATAATTACGGAGCAGGGCATCGTGATAGTCG
CGACAGTGCCGGGGGAGGAGGAGGAGACTTTAGCGAATCCTTGAGCATCG
CTTCCGAGATGGTCGGAAAAGTTATTGGAAGAGGGGGCTCCAATATATCC
CGGATCCAGAACGACTTCAATGTCCGCGTCAAATTGGACAAGTGCGACTT
AATAGTCAAGATAACTGGTAGCATCCAGAGCAACGTCATCGATGCTATCA
ATCACGTTCGCAAGCAGGTCACTAATTCGGGTGATAGGGGACAGGATCGC
GATAATAGGGACCACGGTTCCAATGAAAGATATGACGGAGGCGGATACGA
CAGATACAAGGGGAATAGCTACGAGTTCAATCCCACTTCTTCTGAGTCCA
ATAAGGACAATGGGGATCTTACGGGCATCATTGATTGGGAAGCCCTGAAT
AAAGCTTCGATAGCAGCTACTGCGGCACGGTGGTCCAAGTGTCCACCGCT
AACAAAGAACTTTTACAAGGAGGCTCCTGAAGTGGCCAATCTGACAAAAT
CGGAGATTGAGCGCATTCGCGAGGAGAACAACAAGATAACAGTTTCTTAT
GTTTTCGAGCCAAAGGAGGGGGAAACGTCACCGCCTATTCCAAATCCAGT
TTGGACCTTCGAGCAATGCTTTGCCGAATATCCAGATATGCTTGAGGAGA
TTACCCGAATGGGCTTCTCCAAGCCCTCGCCCATCAATCGCAGCGTTGCC
CATTCTCCTCCAAGGTCATGAACATGATCGGTATCGCCCAAACAGGCACT
GGCAAACACTAGCCTTCTTTTGCCGAATGATTCAACCGAGTAACAAAAGC
ACGCTAGTGCACGAGGGGCGGAGCTACGTCTGGTGCTGCACCCACTCGGG
ATGA
UFO03442.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:39:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7878-RA | 2375 | CG7878-RA | 129..1231 | 9..1101 | 5080 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:39:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8122853..8123503 | 9..659 | 3255 | 100 | Plus |
| 3R | 32079331 | 3R | 8123558..8123922 | 659..1021 | 1570 | 97.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:39:14 has no hits.
UFO03442.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:01:41 Download gff for
UFO03442.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7878-RA | 155..1258 | 9..1103 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:50:28 Download gff for
UFO03442.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7878-RA | 129..1232 | 9..1103 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:08:43 Download gff for
UFO03442.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7878-RA | 129..1232 | 9..1103 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:08:43 Download gff for
UFO03442.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8122853..8123503 | 9..659 | 100 | -> | Plus |
| 3R | 8123559..8124011 | 660..1103 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:50:28 Download gff for
UFO03442.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3948575..3949225 | 9..659 | 100 | -> | Plus |
| arm_3R | 3949281..3949733 | 660..1103 | 95 | | Plus |
