UFO03444.5prime Sequence
1122 bp (968 high quality bases) assembled on 2009-02-03
> UFO03444.5prime
CAGTCGACATGGATCTCAATGACGCAGTGCTCACCTGTGCGGTGAACATG
GAGTGGACCAATGCGGTGGGCATCACGGGTCGCAAACTGGCCTACAAGAC
TGCCACATTGCGCCTGGTGCGGAACGATTTGCGTGAATTGTTTGTTGAGG
TGACGCCGGAGAAACTAAAGCCCCTGAAGTTCAAGCTGAAGGATCTGATG
GTGCACAAGAAGTTCATGTCCGAGGGCAAGGCCACCTTCAACTTCAAGGC
GGAGAAGTGCACCCTCTATCTATCGAATGCACCGCCGGGGACTTTGATGT
TCTTCCTGCGGACGATCTTCGTTAAAATGAACGGAAACGAGGGAGGATCC
CAGCCGGACGATGCGACCTTGCAGAAGAAACTCCGCGAGCACCTGATGTC
AGGCAAGCCAAGCAGCTTTAACGACGTTTCTCCAGTCACCACGGCCGAGA
TGATTTTGGCGCGCAAAAAGGCGGGTTTGTTGTCCAAGGGGTCAGTGACC
ACGCCGTCGCCCCAGGGCGCCAAAAAGCGTCGCTTCGAGGAGCTCAAGGA
GGAGAAGGAACGGGGCACCATGCCCGCGGCCAAGAAACTATATGCGTCGA
CTACCGACGAGTCGCTGAGACTCAGTGAGGAGCAAATGGAAGTCCTGCGG
GCGTGCACCTCGGGCAAGAGCGTATTCTTCACCGGTTCAGCAGGCACTGG
CAAGAGTTTCTTGCTCCGCAGGATCATCTCAGCCCTGCCGCCCGATGGAA
CGGTGGCCACGGCCTCCACGGGAGTGGCAGCCTGCCTGATCGGTGGGACC
ACCTTGCACGCCTTCGCTGGCATAGGAGGAGGAGACGCCACCATGCAGCG
GTGTCTGGAGCTGGCTTCCCGACCCTCTATTGCCCAGACGTGGAGGAAGT
GCAGCGGTTGATTATTGACGAGATCTCCATGGTGGACGGACAGTTCTTTG
AGAAAATTGAAGCCGTCGCACGCCAAATTCGCGCAATGATCGCCCCTTTG
GCGGCATACAGCTCATCCTGGGTGATGACTTCTTGCAACTGCCTCCAGTC
TAAAAGGAGATTGGCGCATCCCCAATGCCCGCCCCAGCACGATCGCTTCA
GTCTCGCATGGAACTGCATCCA
UFO03444.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:28:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3238-RB | 2611 | CG3238-RB | 106..1198 | 4..1089 | 5105 | 98.2 | Plus |
| CG3238-RA | 2529 | CG3238-RA | 106..1198 | 4..1089 | 5105 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:28:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3468950..3469899 | 952..4 | 4640 | 99.5 | Minus |
| 2L | 23513712 | 2L | 3468792..3468899 | 1057..951 | 385 | 92.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:28:35 has no hits.
UFO03444.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:01:39 Download gff for
UFO03444.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3238-RA | 105..1170 | 1..1062 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:27 Download gff for
UFO03444.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3238-RA | 102..1167 | 1..1062 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:40 Download gff for
UFO03444.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3238-RA | 102..1167 | 1..1062 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:40 Download gff for
UFO03444.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3468950..3469898 | 1..952 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:27 Download gff for
UFO03444.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3468950..3469898 | 1..952 | 99 | | Minus |
