UFO03447.5prime Sequence
1100 bp (994 high quality bases) assembled on 2009-02-03
> UFO03447.5prime
CAGTCGACATGTTTGCTACACTGAAAAACAAGATCAAGGAGGAAACTGGC
GATGATGTGGTCCAATCAGCCAATCAACGTTATCCCGGCAACAACAACAA
CAATTACCGGCTACGTAGTCGCCGCGTTAGCATTAATTCCAACTCAGCTG
ATGATGTGGGCGGTGGCGGATTCTACAATGAGTCGGAGCAATTGTGCGAG
CTGCGAAGTCAGTGCAACGAGCTCACCACGAAGCTGTCCACCGTCACGCA
GGGATTGCAGCAGCTGCAGGAGGAGAAGACGCGCGTGGACAAGACCAACG
AGATTCTGCTAGAGAGTGTGCGTGTGGCCCAGACGCAGAAGGACATATAC
TGCGAGGAGCAGGAGAAGATTCAGAATCTACAGCAAATCGAGATTGACAA
GCTGAAGAATCTGCTTAGCTTTCGGGAGCAGGAGTCGGTGGATCGCATGG
GTCTCATGCGCCAGCAGACCCAGCAAATCGAGTCCTTGAGCGAGGAACTA
GAACGTCTGCGTCCCATTGAATCCGTGGCCGAAGATTTACGCGACGAACT
AGAGCAACTGCGACATTCTACACAGCAGGAGAAGAATCTGCTGACCACAA
CACTGGCGGCTGTACAGGAGGAGAACCGGCACCTCAAAAAGCGCATGAAA
ATCGTCGAGGAGTCGCGACTCGAGTCTCTGGGCAAACTGAACTCCGAGCA
ACAAGTGCAAGCCCTTATCCGGGAACATAAACTGCTGGAACAGCACTTAG
AGGAGGCCCATCTGCAGTTGTCGGACATCAAAGCTCGTGGAGTGGCCAGA
ATCTGGCGCTGGAAACCCAAGTTAGTCGTCTATCCAAGCAAGTGTCCGAT
GAGACCACCGAAAAGCGAAAGGCCCTTAAATCCCGCGACGATGCCATTGA
AAGCCGCAGCAGGTATCATTCGAACTCGAAAAGCCCAAGATGAAATAAAG
CAGCGGGACGATACGTCAAGCTGCTGGAGGAGAAATCGATGACTTATGTG
GCCCTGAAGAGTGCGAAAGGAGACGAGCAGCAAGTCTTCTTTGACGCATA
ATCCTCAAATTTGAAACGAAGTAAAAGATCTCAAGACTTCGTCCTAGGCA
UFO03447.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:45:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cbs-RC | 2227 | CG4840-RC | 240..1334 | 9..1088 | 4965 | 97.8 | Plus |
| cbs-RB | 2233 | CG4840-RB | 240..1334 | 9..1088 | 4965 | 97.8 | Plus |
| cbs-RA | 2257 | CG4840-RA | 240..1334 | 9..1088 | 4965 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:45:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13451088..13451873 | 181..963 | 3735 | 99.2 | Plus |
| 2R | 25286936 | 2R | 13450825..13450998 | 9..182 | 870 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:45:57 has no hits.
UFO03447.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:01:48 Download gff for
UFO03447.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cbs-RA | 162..1267 | 9..1099 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:39:04 Download gff for
UFO03447.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cbs-RA | 240..1345 | 9..1099 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:40:12 Download gff for
UFO03447.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cbs-RA | 240..1345 | 9..1099 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:40:12 Download gff for
UFO03447.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13450825..13450998 | 9..182 | 100 | -> | Plus |
| 2R | 13451090..13451875 | 183..964 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:39:04 Download gff for
UFO03447.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9338330..9338503 | 9..182 | 100 | -> | Plus |
| arm_2R | 9338595..9339380 | 183..964 | 98 | -> | Plus |
