UFO03449.5prime Sequence
1099 bp (985 high quality bases) assembled on 2009-02-03
> UFO03449.5prime
CAGTCGACATGCCGTTGACCAAGAGTTTGCCAAATTCTCCGTCGCTTTTG
AAGCGCGCCGGCACCGAAAAGTTGCGAGAGGTGTTCCTGAAGTACGCATC
CATCCAGAAGAATGGCGAGCACTATATGACCAGCGAGGACTTCGTGCGAA
AGTTCCTGGGACTCTTTTCCGAATCTGCATTTAATGACGAATCGGTGCGC
CTGCTGGCCAACATTGCGGACACGAGCAAGGATGGACTCATCTCCTTCTC
GGAGTTCCAGGCGTTCGAGGGTCTGCTCTGCACTCCAGATGCCCTCTACA
GGACCGCTTTCCAGCTGTTCGACCGCAAGGGCAACGGCACTGTTTCCTAT
GCTGACTTCGCTGATGTCGTACAAAAAACTGAACTGCACTCAAAGATACC
TTTTAGCTTAGATGGCCCCTTTATCAAGCGCTACTTTGGTGATAAGAAGC
AACGCCTTATCAACTATGCTGAGTTCACGCAGCTGCTGCACGACTTTCAC
GAGGAGCACGCGATGGAGGCCTTCCGCAGCAAGGATCCAGCTGGCACTGG
GTTCATCTCGCCATTGGACTTCCAGGACATCATAGTTAATGTTAAGCGGC
ATTTACTGACCCCCGGCGTCAGGGACAATCTAGTTTCGGTAACTGAGGGT
CACAAAGTGAGCTTCCCGTATTTCATCGCATTTACCTCGCTGCTGAACAA
CATGGAACTGATCAAACAAGTCTACCTGCACGCCACCGAGGGCAGTCGCA
CGGATATGATCACCAAGGATCAGATCCTCCTCGCCGCCCAAACGATGAGC
CAAATCACGCCGCTGGAGATCGACATACTTTTCCACCTGGCGGGCGCCGT
CCATCAAGCAGGCCGCATCGACTATAGTGACCTGACGCACATCTCACCGA
GCATTACACCAAGCATATGACACATCGTCTGGCGGAGATCAGGCGGTGGA
GAGTCCTGCGGACCGATCTGCCTTTATCAGGTCCTGGAAGAGCTCTTACG
GTTCATTCTCGGTTCCTTTGCCGGCGGCTGCTGGGCGCCACTGGTGTCTA
CCCATCGATCTATTTCAAGAATCGAATGCAGAACAGAGCGATTCTAATA
UFO03449.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:28:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| aralar1-RF | 2770 | CG2139-RF | 152..1228 | 9..1084 | 5030 | 98.3 | Plus |
| aralar1-RD | 2340 | CG2139-RD | 152..1228 | 9..1084 | 5030 | 98.3 | Plus |
| aralar1-RA | 2770 | CG2139-RA | 152..1228 | 9..1084 | 5030 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:28:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30448346..30448570 | 862..638 | 1125 | 100 | Minus |
| 3R | 32079331 | 3R | 30448632..30448829 | 641..444 | 990 | 100 | Minus |
| 3R | 32079331 | 3R | 30449042..30449208 | 355..189 | 820 | 99.4 | Minus |
| 3R | 32079331 | 3R | 30449806..30449959 | 189..36 | 770 | 100 | Minus |
| 3R | 32079331 | 3R | 30447411..30447579 | 1027..862 | 510 | 93.5 | Minus |
| 3R | 32079331 | 3R | 30448896..30448988 | 443..351 | 465 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:28:28 has no hits.
UFO03449.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:01:34 Download gff for
UFO03449.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aralar1-RD | 147..1234 | 1..1091 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:23 Download gff for
UFO03449.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aralar1-RA | 147..1234 | 1..1091 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:35 Download gff for
UFO03449.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aralar1-RA | 147..1234 | 1..1091 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:35 Download gff for
UFO03449.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30447412..30447578 | 863..1026 | 94 | <- | Minus |
| 3R | 30448346..30448569 | 639..862 | 100 | <- | Minus |
| 3R | 30448635..30448829 | 444..638 | 100 | <- | Minus |
| 3R | 30448896..30448987 | 352..443 | 100 | <- | Minus |
| 3R | 30449046..30449208 | 189..351 | 100 | <- | Minus |
| 3R | 30449807..30449959 | 36..188 | 100 | <- | Minus |
| 3R | 30450229..30450260 | 1..35 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:23 Download gff for
UFO03449.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26273134..26273300 | 863..1026 | 94 | <- | Minus |
| arm_3R | 26274068..26274291 | 639..862 | 100 | <- | Minus |
| arm_3R | 26274357..26274551 | 444..638 | 100 | <- | Minus |
| arm_3R | 26274618..26274709 | 352..443 | 100 | <- | Minus |
| arm_3R | 26274768..26274930 | 189..351 | 100 | <- | Minus |
| arm_3R | 26275529..26275681 | 36..188 | 100 | <- | Minus |
| arm_3R | 26275951..26275982 | 1..35 | 91 | | Minus |
