UFO03451.5prime Sequence
1143 bp (997 high quality bases) assembled on 2009-02-03
> UFO03451.5prime
CAGTCGACATGGCCGAGGACTTTGATGTGGAGGCGATGCTCGAGGCGCCG
TACATGAAAAACAATGTCAGTGCGGGCAGCGGTGGAAGTGGTGGACGCAA
GCGCAGCGGCAGCAGTCCAGGCGGCGGCGGTGGACACGATGACGACTACG
CCGAGAATGGTCCGCGGAACGGCAGCGGCGGCGGAAGCTCACACAAAAAG
CAAAGCAAACGATCCCGGAGTAGAAGCGGCTCGCGTGATGGCAAATCTCG
ACGAGATCGCGGCAATGAACGCAGCAGTCATCGGGACAAGGATAAGGAGC
GCGATCGTAACCGCGACGGCGGCGACCGAGATCGACACCGCAGGGAAGGT
GGCGATCGAGATCGGGAGCGGGAACGTGAGCGCGAACGCGACAGATCTCG
TCGGAGTCGTTCGCGTGATGAGCGCGGTGGAGGTGGTCGCTACGGCGATC
GTGACAAGGATCGCCGCTCGCGAGATCGACGCGGCGGCAGCAAGTCGTTG
CAAGTGGATCGCTCGCGGGACAAGCGTCGACGCAGTCGTTCCCGCGATCA
GCAGCGCAAACGGCTGAGTCCGATCCGTGAACGCAAGCGCAGCCATTCCC
GCTCGAGGGACAGAAATAGCCGCCGTCGGGGAACCAATTCTCCGCGACGC
CGCTCACCACCGAATGGAGCTGATCGCACCACGCCCACCGAACTCAGTCC
CGAGGAGCGGGACGCCCGCACCGTTTTCTGCATCCAGTTGTCGCAGCGAG
TGCGAGCCCGTGACCTGGAGGAGTTTTTCTCCAGCGTCGGCAAGGTGCGC
GACGTGCGTCTAATCACATGCAACAAGACGAAACGCTTCAAGGGCATTGC
CTACATTGAGTTCGATGATCCTGAGTCCGTGGCACTGGGCCCTGGGCCTC
TCTGCCCAGATGATTGCTCGGTGTACCCATCATGGTGCAGCACACGCAGG
CTGAGAAAGATCGTCTCAAGAATGCAGCGCCGGCATTCTAACCGAAGAGG
TCACACGGGTCCCATGCGCTCTACGTGGGGATCACTGCACTTCAACATTA
CGAAGACATGCTGTGGCAATTCGAGCCCTTGGCAAGATCGAATGCATCAA
CTGAATCATGGGATACGGAACGGCGATCCAAGGGCCTACGCTT
UFO03451.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:45:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Caper-RB | 2457 | CG11266-RB | 245..1375 | 9..1135 | 5110 | 97.5 | Plus |
| Caper-RA | 2128 | CG11266-RA | 181..1311 | 9..1135 | 5110 | 97.5 | Plus |
| Caper-RL | 2484 | CG11266-RL | 591..1667 | 63..1135 | 4840 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:45:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7035636..7036035 | 217..616 | 2000 | 100 | Plus |
| 2L | 23513712 | 2L | 7036185..7036616 | 617..1051 | 1810 | 97 | Plus |
| 2L | 23513712 | 2L | 7035407..7035562 | 63..218 | 780 | 100 | Plus |
| 2L | 23513712 | 2L | 7032965..7033018 | 9..62 | 270 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 20:45:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 668..714 | 112..66 | 118 | 72.3 | Minus |
UFO03451.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:01:32 Download gff for
UFO03451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11266-RC | 234..292 | 4..61 | 96 | <- | Plus |
| CG11266-RC | 720..1809 | 62..1143 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:38:41 Download gff for
UFO03451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11266-RA | 175..1319 | 4..1143 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:28:19 Download gff for
UFO03451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Caper-RA | 175..1319 | 4..1143 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:28:19 Download gff for
UFO03451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7032959..7033018 | 4..62 | 96 | -> | Plus |
| 2L | 7035407..7035561 | 63..217 | 100 | -> | Plus |
| 2L | 7035637..7036035 | 218..616 | 100 | -> | Plus |
| 2L | 7036185..7036715 | 617..1143 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:38:41 Download gff for
UFO03451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7032959..7033018 | 4..62 | 96 | -> | Plus |
| arm_2L | 7035407..7035561 | 63..217 | 100 | -> | Plus |
| arm_2L | 7035637..7036035 | 218..616 | 100 | -> | Plus |
| arm_2L | 7036185..7036715 | 617..1143 | 94 | | Plus |
