UFO03457.5prime Sequence
1108 bp (1007 high quality bases) assembled on 2009-02-03
> UFO03457.5prime
CAGTCGACATGAAGGAGTGTCCTTATGGCGAAAAGTGCTACAGGAAGAAT
CCCATTCATTTTGGCGAGTTCTCCCATGCCCACCTTGATGCCATTTATGC
GAAGGGAAATGAATCGGGGGACTATGAGATACCAGCCAATTACTCCAGCG
AGATGATTCACACCCAGTTGAAGCTGCTGGAGAAACTGTTTCCCAAGCAG
GCAACCAACAAGGAACAGGAAGCACATTCCTCTAGCTCAAAACCAGCCGT
AACTGCTCCGGTTGCCAGTGGATCCTCGAGTTCTGGGTCCCTAGATACCA
ATCCCAGTGGATCGTCAGCCTCCGGGCCAGCTGCTTCCCAAGACACCTCA
AATCTGGCCAAAAAACAGAAGCTAAATGCCAAGAACATCAGAGATTATAT
TCCTGTGGTAATCGAAAAGGGAGGAATGGCCAAAAAGCTGGAGCGGGCAG
CTCCCTATAACATGTTCCTCACCGCGATCACGGACTCCAAGCCCACCCAC
TCGGAGCCATTGAGCATAACGCTGCAGGAAATCCTGGACGAAAGTCTCGG
CGAGATTGAGAGCACCGTCCAAATTAACTTTATGGTGGACATTGGCTGGC
TCCTGGGACACTACTACTTTGCCGGGATACTGGACAAGCCACTTTTGCTG
CTCTACGGCGACGAATCGCCGGAGCTGCTTAGCATTGGGAAGTTCAAGCA
GCAGGTCACGGCCATTCGTGTCAAGATGCCCACGCCGTTTGCCACCTCGC
ACACCAAGATGATGTTCCTCGGCTACAGCGATGGCTCCATGCGGGTGGTC
ATATCCACGGCGAATCTGTACGAGGACGACTGGCACAATCGCACGCAGGG
CCTGTGGATCAGTCCCAAGCTGCCCGCTCTGCTGTCGATGCTGATACGGC
GCTGGCGAAAGTCTGACGGGCTTCAAACAGATCTGATGCTGTACTTGGTG
GAATACAAGATAAGCCAGCTGCAGCCCTGGATAGCAAGGAATCCGGAACA
GTGATTTCATGCCATCAACGTTTTCTTCTTGGGCTTGTGGCCCGGAGTCA
TCGCGAGGGCAGCTGGCGTGTCATCCATGGGTCACGCTCGCTGCTCCTGC
TCGCCAAC
UFO03457.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:19:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gkt-RA | 2221 | CG8825-RA | 122..1232 | 7..1107 | 5075 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:19:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3160203..3160750 | 85..632 | 2740 | 100 | Plus |
| 2L | 23513712 | 2L | 3160810..3161189 | 632..1009 | 1615 | 97.4 | Plus |
| 2L | 23513712 | 2L | 3160071..3160148 | 7..84 | 390 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:19:42 has no hits.
UFO03457.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:01:31 Download gff for
UFO03457.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gkt-RA | 111..1207 | 1..1092 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:06 Download gff for
UFO03457.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gkt-RA | 117..1213 | 1..1092 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:13:02 Download gff for
UFO03457.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gkt-RA | 117..1213 | 1..1092 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:13:02 Download gff for
UFO03457.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3160066..3160148 | 1..84 | 96 | -> | Plus |
| 2L | 3160203..3160749 | 85..631 | 100 | -> | Plus |
| 2L | 3160810..3161199 | 632..1018 | 97 | -> | Plus |
| 2L | 3161255..3161319 | 1019..1081 | 91 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:06 Download gff for
UFO03457.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3160066..3160148 | 1..84 | 96 | -> | Plus |
| arm_2L | 3160203..3160749 | 85..631 | 100 | -> | Plus |
| arm_2L | 3160810..3161199 | 632..1018 | 97 | -> | Plus |
| arm_2L | 3161255..3161319 | 1019..1081 | 91 | -> | Plus |
