UFO03458.5prime Sequence
1111 bp (1000 high quality bases) assembled on 2009-02-03
> UFO03458.5prime
CAGTCGACATGGGTAGTGACTGGGACGAGATCAAGCGCTTGGCCGCCGAC
TTTCAGAAGGCGCAGCTCACGTCTACGCTGCAGAAGCTCTCGGAGCGAAA
CTGCGTGGAGATCGTCACGCTGCTGCTGGAGAAGCAGATGCTGGAGGTGG
TGTTCACCAACGATGGCAAGGAGTACATCACGCCGGATCATCTGGAGCGC
GAGATCCAGGACGAGTTGTACGTGAACGGAGGTCGTGCCAACTTGGTGGA
GGTCAGCAAAACCCTAAATGTGGATTTATCACGAATCGAGCTGCTTGCCG
AACGAATATCTGCGGAGAATCAAAGCGTACACCTGGTACTGGGACAGCTA
ATCGACGAGGACTACATCAGTCATATTGCGCAGGAGATCAACGAGAAGCT
GGTTCAGCGAGGAGAGGTTTCCATTTCGGAATTGGCTTCCCAGTTCGATC
TGCCGTCGGACTTCCTGCAACACGACGTGGTCGAAAAGCATCTAGGTAAG
ATTATTAAGGGTCGCCAGGATGCCTCAAATCCGCGGGTGTTCTTCACTCA
GGCCTACATCCAACGTTGCAAAGCGAAGATTCGGGGAGCCCTGGCCGCCA
TTACCAGGCCCATAAATGTGGCTGTGATTCTTCAGAAGATCGGTGTGCAG
GAGAAGATCTTCTACTCGTTGCTGGACGAAATCGCGCCAGCTGGCCAGGT
TACCTCCAAGCAGGCCAACTCCCAATACGTGCCGCACATCTATGCCAAGA
CGCAGGCTGACTGGGTGAACTCGTTCTACAAGCAGAACAGCTTCCTTGAG
TATGATGCCATTCAAAGCTGGGAATTTCGGATGCCAAGTCCTACATTCGC
AAGCCTTTCCTCACGAAGAGTTTCTCTACCTCAAGCGTGTGGCCCTTGCG
CTCGACTGGTGGAGCTCACGGTGGTCCCGCGCTAAATGAGTGCACGTGCC
ACCAAGCAGTACTTGGATCTGACCACCATAACTTCATCCGAATTCTGTCG
AAGAGGATAATCGAGGTGGTTTTCTGCACCTTCATGCGCCCAAAGCATAG
CATTCCCGCAAACTTTTGTTTATCTTTAATGCATGTATTTTCTCACCATA
CCTCTCGCAAT
UFO03458.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:51:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1104-RC | 2482 | CG1104-RC | 36..1140 | 9..1111 | 4890 | 97 | Plus |
| CG1104-RA | 2574 | CG1104-RA | 128..1232 | 9..1111 | 4890 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:51:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7073210..7074182 | 1057..86 | 4215 | 97.1 | Minus |
| 3R | 32079331 | 3R | 7074248..7074325 | 86..9 | 390 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:51:19 has no hits.
UFO03458.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:01:35 Download gff for
UFO03458.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1104-RA | 126..1100 | 9..980 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:57:00 Download gff for
UFO03458.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1104-RA | 128..1102 | 9..980 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:20:55 Download gff for
UFO03458.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1104-RA | 128..1102 | 9..980 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:20:55 Download gff for
UFO03458.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7073205..7074182 | 86..1063 | 97 | <- | Minus |
| 3R | 7074249..7074325 | 9..85 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:57:00 Download gff for
UFO03458.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2898927..2899904 | 86..1063 | 97 | <- | Minus |
| arm_3R | 2899971..2900047 | 9..85 | 100 | | Minus |
