UFO03462.5prime Sequence
1102 bp (987 high quality bases) assembled on 2009-02-03
> UFO03462.5prime
CAGTCGACATGAGAGCCGATGAGGATAATCTGTACCGGGAGCAACTGCCC
AATGTGAGCACGCTTATTAGGGATGGCGGTCGTAAGCTGTGCCGTCCGTC
CACCGTGACCAACAAGTTCCCGATCCTGAAGTGGCTACCTCGTTACCGAT
TGGAGTACATCATGCAGGACTTTATTGCGGGATTCACGGTGGGATTAACG
ACTATTCCCCAGGCGATTGCCTATGGAGTGGTGGCCGGCTTGGAGCCGCA
GTATGGTTTATACTCCGCCTTCATGGGTTGCTTCACATACATCGTGTTTG
GTTCCTGCAAAGATGTCACAATTGCCACAACCGCCATCATGGCTCTAATG
GTCAACCAGTATGCCACTATCAGTCCGGATTATGCGGTTCTGGTGTGTTT
CCTAGCTGGTTGCATTGTACTTCTACTTGGATTGCTCAACATGGGTGTAC
TGGTCAGGTTCATTTCGATTCCCGTAATCACTGGCTTCACCATGGCGGCG
GCCACCACAATTGGCAGTGCCCAGATCAACAACATCGTGGGTCTGACCAG
TCCTTCGAATGATTTACTGCCCGCCTGGAAGAATTTCTTCACCCACTTGA
CGTCAATTAGGCTCTGGGATGCCCTGCTGGGTGTCTCATCTCTGGTGTTC
CTGTTGCTCATGACGCGTGTTAAAGACATCAAATGGGGCAATCGTATATT
CTGGAAGTACCTTGGTCTCTCCCGCAACGCCCTGGCTGTGATCTTTGGCA
CCTTTTTGGCCTACATCCTCAGTCGAGATGGGAATCAACCCTTCCGTGTC
ACTGGAAACATTACGGCCGGAGTACCGCCCTTCCGGCTGCCGCCCTTTAG
CACCACCGTAGATGGAGAGTACGTTTCCTTTGGCGAGACGATCATCACTG
TCGGGCATCCTTGGGTCCATCCCCTTGATTTCGATCCTGGAAATAGTAGC
CATATCGAGCATTTTCTAAGGAAAATTGTAGACGCATCGCAGGAATGGTG
CACTGGATGTGCAACATCATTGGCAGCCTGTGCTCTCATGCGTACCGGAT
CTTTACCGCACGCCTGTATATGCAATGCTGGTGAAATACCATTGGGTGGA
CT
UFO03462.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:10:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5002-RA | 1998 | CG5002-RA | 143..1218 | 9..1067 | 4905 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:10:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17750771..17751071 | 24..324 | 1505 | 100 | Plus |
| 2R | 25286936 | 2R | 17751770..17752065 | 665..958 | 1350 | 98.6 | Plus |
| 2R | 25286936 | 2R | 17751130..17751357 | 324..551 | 1140 | 100 | Plus |
| 2R | 25286936 | 2R | 17751430..17751545 | 550..665 | 580 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:10:27 has no hits.
UFO03462.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:01:28 Download gff for
UFO03462.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5002-RA | 130..1182 | 1..1041 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:12:24 Download gff for
UFO03462.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5002-RA | 135..1187 | 1..1041 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:02:02 Download gff for
UFO03462.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5002-RA | 135..1187 | 1..1041 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:02:02 Download gff for
UFO03462.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17750772..17751071 | 25..324 | 100 | -> | Plus |
| 2R | 17751131..17751355 | 325..549 | 100 | -> | Plus |
| 2R | 17751430..17751545 | 550..665 | 100 | -> | Plus |
| 2R | 17751771..17752074 | 666..965 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:12:24 Download gff for
UFO03462.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13638277..13638576 | 25..324 | 100 | -> | Plus |
| arm_2R | 13638636..13638860 | 325..549 | 100 | -> | Plus |
| arm_2R | 13638935..13639050 | 550..665 | 100 | -> | Plus |
| arm_2R | 13639276..13639579 | 666..965 | 98 | -> | Plus |
