UFO03463.5prime Sequence
1100 bp (986 high quality bases) assembled on 2009-02-03
> UFO03463.5prime
CAGTCGACATGAGTGATAAAACCAAGGAAGACCTGAAGCGCAGTGCCCCG
GAGGAGGAGAATGAGCCCCAGGAGGAATCTGTGTCATCCGAAAAAGAGGC
GGAAGGCGAGGAAGACGCCTGGATTGGACCCATGCCTTCAGAGCAGAGCG
CTCCCGCGCCCGCCAAGAAAAAGAAGGTCCTGCCCTATGAACACATCTAC
CTGGAAAACCTGCCCAATGCTGAGAGCTACGAGAGGAGCTACATGCACCG
CGATGTGATCACTCATTTGGTGTGCACGAAGACGGATTTCGTAGTGACCG
CCAGTCTGGATGGACACATCAAATTCTGGAAGAAGGGCGAGCTGGGCATC
GAGTTCGTCAAGCACTTTCGCAGCCACCTAGTACCCATCAAATCACTGAC
CACCAACGACAGCGGCACGCTGCTCTGCTCGGCGGCCACGGATCAGACAG
CCAAGGTCTTCGATGTTGTCAACTTCGACATGATCAACATCATTCGATTG
GGCTACACACCGCAGTGCAGTGAGTGGATAAATGGGCCGGGAGATGCCGT
ACAAGCACTGGCCATCTCGGATTCAGAGAGTAGCCGCATACACATCTACG
ACGGGCAAGGAGGCGGAGAAGCCCTTCACACCTTGGAGAAACTTCACTCG
GCGCCCGTGGTGGCGATGTGCTTGAATGTGGCCATGGAGACCGTCATTTC
TGTCGATCGCAATGGCATTCTCGAATACTGGCAAAACTCGAAGTACGACT
ACAAGTTTCCACAGCGTCTGGTGAATTTTGACTCCAAGCTAGACACAAGC
CTCTTTGAGTTTGCCAAACAGAAGACCCAAGTCACGGGTTTAGCCGCCAC
GCCGGATGGAAAGCGTTTTGCCGCCATTTCCACAGATCGTACCGTCTGCA
ACTTTCAGTTCAACACGGGCAAGTTGATCCGGGTATTCGATGAAGCTCTA
TCTACATACCCCCAAATGAGCAGACGAGCACGCCCTGCCCACCATGCAGT
TTGGCCGAGATGGCGCCTGACGGGATCTGGAGAGACTCGCCAGAATGCAA
CCTTAATATTTTGTTCGACACGCACTGCAACTTCTGCCTCTACCACTGAT
UFO03463.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:51:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3511-RB | 2044 | CG3511-RB | 58..1150 | 9..1094 | 5035 | 97.9 | Plus |
| CG3511-RA | 2202 | CG3511-RA | 216..1308 | 9..1094 | 5035 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:51:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24572620..24572857 | 562..799 | 1175 | 99.6 | Plus |
| 2R | 25286936 | 2R | 24572124..24572328 | 177..381 | 1025 | 100 | Plus |
| 2R | 25286936 | 2R | 24572384..24572569 | 380..565 | 930 | 100 | Plus |
| 2R | 25286936 | 2R | 24571906..24572074 | 9..177 | 845 | 100 | Plus |
| 2R | 25286936 | 2R | 24572915..24573123 | 799..1005 | 825 | 95.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:51:12 has no hits.
UFO03463.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:01:27 Download gff for
UFO03463.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3511-RA | 174..1266 | 9..1094 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:56:56 Download gff for
UFO03463.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3511-RA | 216..1308 | 9..1094 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:20:52 Download gff for
UFO03463.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3511-RA | 216..1308 | 9..1094 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:20:52 Download gff for
UFO03463.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24571906..24572074 | 9..177 | 100 | -> | Plus |
| 2R | 24572125..24572328 | 178..381 | 100 | -> | Plus |
| 2R | 24572386..24572569 | 382..565 | 100 | -> | Plus |
| 2R | 24572624..24572856 | 566..798 | 100 | -> | Plus |
| 2R | 24572915..24573128 | 799..1009 | 94 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:56:56 Download gff for
UFO03463.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20459429..20459597 | 9..177 | 100 | -> | Plus |
| arm_2R | 20459648..20459851 | 178..381 | 100 | -> | Plus |
| arm_2R | 20459909..20460092 | 382..565 | 100 | -> | Plus |
| arm_2R | 20460147..20460379 | 566..798 | 100 | -> | Plus |
| arm_2R | 20460438..20460651 | 799..1009 | 94 | -> | Plus |
