UFO03466.5prime Sequence
1114 bp (984 high quality bases) assembled on 2009-02-03
> UFO03466.5prime
CAGTCGACATGGCCGAAGTTGAAGCCGTGCAGATAATTGCAGAATCTTTG
AAGCAACAGGGCGTGGAATATGTCTTTGGTATCATCGGCATCCCGGTCAT
CGAGCTGTCCATGGCCTTCCAGGCCGCCGGACTGAAGTACATCGGAATGC
GCAACGAGCAAGCCGCCTGCTATGCTGCCCAGGCCATTGGCTACCTGACT
GGAAAGCCGGGAGTGTGCCTGGTTGTGTCCGGACCGGGACTGCTCCATGT
TACGGGTGGCATGGCCAATGCCCAGGTGAACTGCTGGCCACTAATCGTTA
TTGGTGGTGCCACCAACCAGGATCACGAGGGAATCGGAGGCTTTCAGGAG
TGCCCGCAGGTCGAATTGTCCCGGCCGTACTGCAAGTACGCTGCCCGTCC
GGCCACTGCTGCTCTAATTCCATTGCACGTGGAAAAAGCGGTGCGCTATG
CCACCTATGGACGCCCTGGCGTTGCCTACCTGGACTTCCCTGGCAATATC
TTGCAGTCCAAGGCCCAGGAGGCCAGCATCTACAAGGCGCTGGCCCATCC
GGCTCCCCCACTAGCCTATCCCCCGCACGATGATGTGATCAGGGCCGCCA
AGTTGTTGCGACAGGCCAAGCGACCCTTGGTGATCGTGGGCAAGGGTTCC
GCCTACGCCCATGCCGAGAACACACTGCGCCACTTCATCGAGAACACCAA
CCTGCCCTTCCTCCCCACTCCCATGGGCAAGGGCGTTGTATCCGATACGG
CTCCGCAGTGCGTCTCCTCGGCTCGCACCCTGGCCTTGCAAAAGGCCGAT
GTGGTGCTGCTCCTGGGCGCTCGCCTCAACTGGATTCTCCATTTCGGAAA
GGCTCCACGCTACGACAAGGACGTGAAGTTTACCCTGTTGACATCAATCC
TGAGGAGCTGCATAACTCGGTTGTGGCTTCGGTGGCATCCAGGCGGACAT
CCCGTTCATCGCCGAGCAATTGTTTGAGCAAATGACACCTGTTTACTTTC
GCTTCGCTACAGCATGAATGGTGGAACAGTTGGCGTCAGTGCAGCAAACG
CGACACGTGCAAAAATGTCTTTGAAAGGAAACCGCTGACTACTACCCGGG
GTCACCACTTCCTG
UFO03466.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11208-RA | 1984 | CG11208-RA | 140..1218 | 9..1075 | 4885 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20243660..20244413 | 1006..255 | 3460 | 97.9 | Minus |
| 2R | 25286936 | 2R | 20244483..20244682 | 257..58 | 1000 | 100 | Minus |
| 2R | 25286936 | 2R | 20245198..20245249 | 60..9 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:14:57 has no hits.
UFO03466.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 12:01:25 Download gff for
UFO03466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11208-RA | 145..1155 | 1..1010 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:42:06 Download gff for
UFO03466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11208-RA | 134..1144 | 1..1010 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:59:18 Download gff for
UFO03466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11208-RA | 134..1144 | 1..1010 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:59:18 Download gff for
UFO03466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20243655..20244412 | 256..1010 | 98 | <- | Minus |
| 2R | 20244485..20244680 | 60..255 | 100 | <- | Minus |
| 2R | 20245199..20245255 | 1..59 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:42:06 Download gff for
UFO03466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16131160..16131917 | 256..1010 | 98 | <- | Minus |
| arm_2R | 16131990..16132185 | 60..255 | 100 | <- | Minus |
| arm_2R | 16132704..16132760 | 1..59 | 93 | | Minus |
